View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_40 (Length: 424)
Name: NF10855A_low_40
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 49391769 - 49391422
Alignment:
| Q |
20 |
atcattattttaaggaacacagccacgaccaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaattt |
119 |
Q |
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| T |
49391769 |
atcattgttttaaggaacacagccacgaccaatgggaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagctcaataaaattt |
49391670 |
T |
|
| Q |
120 |
tgttcaacttctcgatttgatgaacatgtcacacgtgagagaggatgacgaatctgacacttttctacaacaattctaacttattggcttccagttttga |
219 |
Q |
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| T |
49391669 |
tgttcaacttctcgatttgatgaacatgtcacacgcgagagaggatgacgaatctgtcacttttctgcaacaattttagcttattggctttcagttttaa |
49391570 |
T |
|
| Q |
220 |
ctacagttcttttatttttaaggttataaccctcatcttgtaa-aaactagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
318 |
Q |
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| T |
49391569 |
ctacagttcttttcttttttaggttataaccctcatcttgtaataaattagttcattcacatgttgggagtattttgcttggggtttggttactatttac |
49391470 |
T |
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| Q |
319 |
caggaatagtgaggaaacccaaacatctggtgttcgtcactacatttg |
366 |
Q |
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| T |
49391469 |
caggaatagtgaggaaacccaaacatctggttttcgtcactacatttg |
49391422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 8542065 - 8542126
Alignment:
| Q |
55 |
aaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
116 |
Q |
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| T |
8542065 |
aaaaatgaaacactcaatggttcctgcaaggcccgccacccaatgacattagcccaataaaa |
8542126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 8607304 - 8607365
Alignment:
| Q |
55 |
aaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
116 |
Q |
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||||||||| ||| | ||||||||||||||||||| | || |||||||||||||| |||||| |
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| T |
8607304 |
aaaaatgaaacactcaatggttcctgcaaggcccgccacccaatgacattagcccaataaaa |
8607365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 24881890 - 24881814
Alignment:
| Q |
40 |
agccacgaccaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
116 |
Q |
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| T |
24881890 |
agccacgactaatggaagaatgaaccactcaatggttcctgcaagacccgccacctagtgacattaacccaataaaa |
24881814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 3929121 - 3929175
Alignment:
| Q |
62 |
aaccacacgatggttcctgcaaggcccgtcgcctaatgacattagcccgataaaa |
116 |
Q |
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| T |
3929121 |
aaccactcaatggttcctgcaaggcccgccacctagtgacattagcccaataaaa |
3929175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 6021087 - 6021149
Alignment:
| Q |
47 |
accaatggaaaaatgaaccacacgatggttcctgcaaggcccgtcgcctaatgacattagccc |
109 |
Q |
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| T |
6021087 |
accaattgaaaaatgaaccactcaatggttcctgcaaggccctccacctaatggcactagccc |
6021149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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