View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_401 (Length: 237)
Name: NF10855A_low_401
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_401 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 35449821 - 35450052
Alignment:
| Q |
1 |
gagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaacaaaatgctccactttccggagtttcaagcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35449821 |
gagaaagagatgaagcacaagaaaaatgtcaaagacttctcttggaaaagctagttttccatcaacaacaaaatgatccactttccggagtttcaagcat |
35449920 |
T |
|
| Q |
101 |
tgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcatcagattgtgaagaaagcattgtttcttcaccaattatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449921 |
tgaagatgaacaagttacaagaaaaggaattgactcaaacaatggtttttctttgtcttcttcagattgtgaagaaagcattgtttcttcaccaattatt |
35450020 |
T |
|
| Q |
201 |
gatcaatcaatgattgaagtactaacaccaaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
35450021 |
gatcaatcaatgattgaagtactaacaccaaa |
35450052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21010700 - 21010633
Alignment:
| Q |
1 |
gagaaagagatgaagcacaagaaaaatgtgaaagacttctcttggaaaagctagttttccatcaacaa |
68 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| |||||| || ||||||| |||||| |
|
|
| T |
21010700 |
gagaaagagatgaagcacaagaaaaatgccaaagacttttcttagaaaagttacttttccaacaacaa |
21010633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University