View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_403 (Length: 237)
Name: NF10855A_low_403
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_403 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 220
Target Start/End: Complemental strand, 40193280 - 40193084
Alignment:
| Q |
24 |
agaagtgagcatatatatattctcagtagaagtagtattgctggctccaatgaaagaaaatacttatcagttatctcataggattagtttataatctaat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40193280 |
agaagtgagcatatatatattctcagtagaagtagtattgctggctccaatgaaagaaaatacttatcagttatctcataggattagtttataatctaat |
40193181 |
T |
|
| Q |
124 |
tgacaatcgatttatcaaaaatttgtcaaaaataaatcgatttatcaaaaaagtgctaatattcatttagcttttagtaagactaaggacgtgatat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40193180 |
tgacaatcgatttatcaaaaatttgtcaaaaaaaaatcgatttatcaaaaaagtgctaatattcatttagcttttagtaagactaaggacgtgatat |
40193084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University