View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_41 (Length: 422)
Name: NF10855A_low_41
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_41 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 55336207 - 55336394
Alignment:
| Q |
13 |
atccttcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatt |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55336207 |
atccgtcgtcgtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatt |
55336306 |
T |
|
| Q |
113 |
tccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55336307 |
tccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
55336394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 255 - 419
Target Start/End: Original strand, 55336449 - 55336613
Alignment:
| Q |
255 |
gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55336449 |
gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct |
55336548 |
T |
|
| Q |
355 |
ccaatgaagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttga |
419 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55336549 |
ccaatgaagattccacatcttcctcagtaataagattaccaagattgattttggtttggatttga |
55336613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 55330779 - 55330956
Alignment:
| Q |
23 |
gtttcctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctc |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| | |||||| |||| ||| |||||||||||||||||||| |
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|
| T |
55330779 |
gtttcctacaaatgcagaacctatagctgcaattccagtgagtaatggaccagcagttgctaaactcttattaacctttaatgctatatttccaagtctt |
55330878 |
T |
|
| Q |
123 |
tcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
||||| |||||||| ||||| | || ||||||||||||||||| |||| |||| |||||||||| |||||||||||| |
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|
| T |
55330879 |
tcataatcttcaatatctttcattttcacaacttcaataacttctctcaattccttttctaattcctcactccatcca |
55330956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 258 - 357
Target Start/End: Original strand, 55331017 - 55331116
Alignment:
| Q |
258 |
ggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcca |
357 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
55331017 |
ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca |
55331116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 8431120 - 8431285
Alignment:
| Q |
32 |
aaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtct |
131 |
Q |
| |
|
||||| ||| ||||| ||||||||||| | ||||||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| ||| |
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|
| T |
8431120 |
aaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcataatct |
8431219 |
T |
|
| Q |
132 |
tcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccat |
197 |
Q |
| |
|
|||| |||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
8431220 |
tcaacgtcttttctctttatcacttcaacaacatccctcatttccatttctaattcttcactccat |
8431285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 8376030 - 8375861
Alignment:
| Q |
27 |
cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat |
126 |
Q |
| |
|
|||||||||| || || || ||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| |||| |
|
|
| T |
8376030 |
cctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcat |
8375931 |
T |
|
| Q |
127 |
agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactcca |
196 |
Q |
| |
|
| |||||| |||||| ||||||| ||||||| ||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8375930 |
aatcttcagcgtcttttctctttatcacttcaacaacttccctcatttccatttccaattctttactcca |
8375861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 8439094 - 8439242
Alignment:
| Q |
48 |
gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct |
147 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||||||||| ||||||||||| ||||| |||||| |||||| |||| |
|
|
| T |
8439094 |
gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttcagcgtcttttctct |
8439193 |
T |
|
| Q |
148 |
ttacaacttcaataacttccctcatttccatttctaattcttcactcca |
196 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
8439194 |
ttatcacttcaacaacttccctcatttccatttccaattctttactcca |
8439242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 8411976 - 8412149
Alignment:
| Q |
27 |
cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat |
126 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
8411976 |
cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat |
8412075 |
T |
|
| Q |
127 |
agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
| |||||| ||||| ||||| | |||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8412076 |
aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca |
8412149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 8434074 - 8434247
Alignment:
| Q |
27 |
cctacaaatgcagaacctattgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcat |
126 |
Q |
| |
|
|||||||||| ||| || |||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| |||| |
|
|
| T |
8434074 |
cctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcat |
8434173 |
T |
|
| Q |
127 |
agtcttcaatgtctttactctttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
| |||||| ||||| ||||| | |||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8434174 |
aatcttcagaatcttttctcttgatcacttcagcgacttcctgcatttccatttctaattcttcactccatcca |
8434247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 8395692 - 8395540
Alignment:
| Q |
48 |
gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct |
147 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| |||||| |||||| | | |
|
|
| T |
8395692 |
gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt |
8395593 |
T |
|
| Q |
148 |
ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8395592 |
ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca |
8395540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 48 - 200
Target Start/End: Original strand, 8405880 - 8406032
Alignment:
| Q |
48 |
gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct |
147 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| |||||| |||||| | | |
|
|
| T |
8405880 |
gctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaaagctatgtttccaagtctgtcataatcttcagcgtcttttcgtt |
8405979 |
T |
|
| Q |
148 |
ttacaacttcaataacttccctcatttccatttctaattcttcactccatcca |
200 |
Q |
| |
|
|||| || |||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8405980 |
ttaccacgtcaacaacttccctcatttccatttccaattcttcactccatcca |
8406032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 199
Target Start/End: Original strand, 8417212 - 8417366
Alignment:
| Q |
45 |
attgctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttac |
144 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||| ||||||||| | |||||| ||||| ||||||||||| ||||| |||||| ||||| | |
|
|
| T |
8417212 |
attgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttc |
8417311 |
T |
|
| Q |
145 |
tctttacaacttcaataacttccctcatttccatttctaattcttcactccatcc |
199 |
Q |
| |
|
|||| | |||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
8417312 |
tcttgatcacttcagcgacttcctgcatttccatttctaattctttactccatcc |
8417366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 8395492 - 8395392
Alignment:
| Q |
257 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
356 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
|
|
| T |
8395492 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8395393 |
T |
|
| Q |
357 |
a |
357 |
Q |
| |
|
| |
|
|
| T |
8395392 |
a |
8395392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 357
Target Start/End: Original strand, 8406080 - 8406180
Alignment:
| Q |
257 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
356 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
|
|
| T |
8406080 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8406179 |
T |
|
| Q |
357 |
a |
357 |
Q |
| |
|
| |
|
|
| T |
8406180 |
a |
8406180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 175
Target Start/End: Original strand, 8403959 - 8404048
Alignment:
| Q |
86 |
actcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactctttacaacttcaataacttccctcatttc |
175 |
Q |
| |
|
||||||||||||||| ||||| ||||| || | ||||||||| || ||||| ||||| ||||| || |||||||| || ||| ||||||| |
|
|
| T |
8403959 |
actcttgttaatctttaatgcaatattccctaatctctcataatcctcaatatcttttctcttcaccacttcaattacctccttcatttc |
8404048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 8417081 - 8417197
Alignment:
| Q |
51 |
gcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactcttta |
150 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | |||||||| | |||||| ||||| |||||||| || | ||| |||||| ||||| ||||||| |
|
|
| T |
8417081 |
gcaattcctgtgagtaatggccctgcaattgctaaactcttgtctaccttcaaagctatgtttccaagcctgttataatcttcagcatcttttctcttta |
8417180 |
T |
|
| Q |
151 |
caacttcaataacttcc |
167 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
8417181 |
tcacttcaacaacttcc |
8417197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 8368481 - 8368541
Alignment:
| Q |
272 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
332 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
|
|
| T |
8368481 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8368541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 8400929 - 8400869
Alignment:
| Q |
272 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
332 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
|
|
| T |
8400929 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8400869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 8422506 - 8422446
Alignment:
| Q |
272 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
332 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
|
|
| T |
8422506 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8422446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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