View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_436 (Length: 230)

Name: NF10855A_low_436
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_436
NF10855A_low_436
[»] chr4 (19 HSPs)
chr4 (1-230)||(29123435-29123665)
chr4 (1-230)||(22340575-22340804)
chr4 (1-230)||(4303199-4303428)
chr4 (6-226)||(18116384-18116604)
chr4 (1-173)||(17826778-17826950)
chr4 (1-230)||(8110914-8111143)
chr4 (6-226)||(23158152-23158372)
chr4 (6-226)||(36279205-36279425)
chr4 (6-226)||(51872685-51872905)
chr4 (78-230)||(15705634-15705786)
chr4 (1-230)||(3621498-3621727)
chr4 (6-230)||(12915787-12916011)
chr4 (3-226)||(15649066-15649289)
chr4 (22-103)||(50693772-50693853)
chr4 (22-103)||(36951324-36951405)
chr4 (22-103)||(17469142-17469223)
chr4 (38-109)||(24059760-24059831)
chr4 (168-230)||(17838698-17838760)
chr4 (167-226)||(6614197-6614256)
[»] chr1 (9 HSPs)
chr1 (2-230)||(49369763-49369991)
chr1 (6-226)||(41342810-41343030)
chr1 (6-202)||(27029976-27030172)
chr1 (6-226)||(10003931-10004151)
chr1 (38-127)||(24545091-24545180)
chr1 (14-106)||(28520847-28520939)
chr1 (44-103)||(37668976-37669035)
chr1 (39-106)||(26996083-26996150)
chr1 (163-230)||(5557263-5557330)
[»] chr3 (14 HSPs)
chr3 (3-230)||(23603259-23603485)
chr3 (1-230)||(8595253-8595482)
chr3 (9-226)||(42462720-42462937)
chr3 (6-226)||(23571623-23571843)
chr3 (1-230)||(48547550-48547779)
chr3 (6-226)||(3514684-3514904)
chr3 (3-226)||(17153806-17154029)
chr3 (6-226)||(9819060-9819280)
chr3 (51-226)||(53152132-53152307)
chr3 (6-170)||(42459305-42459469)
chr3 (22-103)||(16664099-16664180)
chr3 (22-103)||(52196409-52196490)
chr3 (30-103)||(39632858-39632931)
chr3 (39-103)||(10754186-10754250)
[»] scaffold0041 (1 HSPs)
scaffold0041 (6-226)||(74298-74518)
[»] chr7 (18 HSPs)
chr7 (6-226)||(40891766-40891986)
chr7 (6-226)||(586784-587004)
chr7 (3-226)||(37075589-37075812)
chr7 (6-226)||(12121586-12121806)
chr7 (6-226)||(24819697-24819917)
chr7 (18-226)||(36575396-36575604)
chr7 (3-226)||(9403131-9403347)
chr7 (3-226)||(34981847-34982070)
chr7 (1-206)||(20705489-20705694)
chr7 (1-206)||(20873533-20873738)
chr7 (22-103)||(22865766-22865847)
chr7 (22-103)||(47548969-47549050)
chr7 (22-103)||(47553412-47553493)
chr7 (22-106)||(27987585-27987669)
chr7 (27-106)||(27869020-27869099)
chr7 (22-127)||(18815411-18815516)
chr7 (33-106)||(8457213-8457286)
chr7 (25-106)||(5196753-5196834)
[»] scaffold0032 (1 HSPs)
scaffold0032 (1-230)||(58393-58622)
[»] chr5 (10 HSPs)
chr5 (6-230)||(11266021-11266245)
chr5 (1-230)||(27891694-27891923)
chr5 (7-215)||(5824972-5825180)
chr5 (3-226)||(6678577-6678798)
chr5 (26-230)||(29150301-29150504)
chr5 (22-103)||(29322916-29322997)
chr5 (18-106)||(31962686-31962774)
chr5 (22-103)||(38931892-38931973)
chr5 (25-103)||(8896369-8896447)
chr5 (111-226)||(10462244-10462359)
[»] chr2 (9 HSPs)
chr2 (14-230)||(38938468-38938684)
chr2 (6-223)||(30275892-30276109)
chr2 (3-226)||(32349874-32350097)
chr2 (3-215)||(23384854-23385066)
chr2 (7-215)||(21963419-21963627)
chr2 (7-180)||(21964639-21964812)
chr2 (56-226)||(27914653-27914823)
chr2 (22-103)||(1258584-1258665)
chr2 (23-131)||(22300858-22300966)
[»] chr8 (6 HSPs)
chr8 (6-226)||(26077728-26077948)
chr8 (1-194)||(31423238-31423431)
chr8 (22-202)||(29532381-29532561)
chr8 (22-216)||(26390260-26390454)
chr8 (22-103)||(10801698-10801779)
chr8 (162-226)||(2959748-2959812)
[»] chr6 (8 HSPs)
chr6 (1-216)||(667285-667490)
chr6 (6-226)||(18295398-18295618)
chr6 (1-230)||(28604884-28605113)
chr6 (6-202)||(2894261-2894457)
chr6 (22-206)||(7218368-7218552)
chr6 (6-131)||(17228031-17228156)
chr6 (22-103)||(5391535-5391616)
chr6 (79-202)||(9759578-9759701)
[»] scaffold0003 (1 HSPs)
scaffold0003 (22-206)||(224744-224928)
[»] scaffold0289 (1 HSPs)
scaffold0289 (22-127)||(11164-11269)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 29123435 - 29123665
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggtt-cccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgcta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29123435 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggtttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgcta 29123534  T
Q  100 caaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  29123535 caaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagagaccatttgttttttca 29123634  T
Q  200 atgtgatttttatggtcaattatggctcttg 230  Q
    ||||||||||||||||| |||||||||||||    
T  29123635 atgtgatttttatggtcgattatggctcttg 29123665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 22340804 - 22340575
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22340804 tcaatatcactgcagtgtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctaaatagacttgctac 22340705  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  22340704 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgtggccttgtgtggtaaggaggaggaaagagatcatttgttttttcaa 22340605  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||| |||||||| |||||||||||||    
T  22340604 tgtgattattatggtcgattatggctcttg 22340575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4303199 - 4303428
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  4303199 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcgtctttttctgaatagacttgctac 4303298  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  | |||||||||||||||    
T  4303299 aaaggacaatcttcgcaagaggaatatccttcatgctacagattcttcttgtgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 4303398  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||| |||||||| |||||| ||||||    
T  4303399 tgtgattattatggtcgattatgactcttg 4303428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 18116384 - 18116604
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18116384 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 18116483  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  18116484 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 18116583  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||  ||||||||    
T  18116584 ttattatggtcggttatggct 18116604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 17826778 - 17826950
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17826778 tcaatatcactgtagagtttgatcaatttttatggcttaaagtggtttccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 17826877  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggag 173  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17826878 aaaggagaatcttcgcaagaggaatgtccttcaggctacagatgcttcttgtgcggccttgtgtggtaaggag 17826950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8111143 - 8110914
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  8111143 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtatggcgtctctttctgaatagacttgcaac 8111044  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||||||||| ||||||||||| ||| || ||| | |  ||   ||||| |||||||||||||||||||||||||||||  | ||||| |||||||||    
T  8111043 aaaggacaacctgcgcaagaggaacgtctttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttcttttttcaa 8110944  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||  |||||||| |||||||||||||    
T  8110943 tgtgatcattatggtcgattatggctcttg 8110914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 23158152 - 23158372
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||| | |||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23158152 atcactgcatattttgatcaatttttatggcttaaagcagtccccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 23158251  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||| |||    
T  23158252 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatatga 23158351  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  23158352 ttattatggtcgattatggct 23158372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 36279205 - 36279425
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  36279205 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 36279304  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||| ||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||| ||||  ||||||||||||| |||||||     
T  36279305 ataatcttcgtaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggagaaaagggatcatttgtttttccaatgtgc 36279404  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  36279405 ttattatggtcgattatggct 36279425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 51872905 - 51872685
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  51872905 atcactgcagattttgttcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 51872806  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||| | ||  || || | ||||||||||||||||||  ||||||||||||| ||||| ||    
T  51872805 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcctatggtgctttatttggtaaggaggaggaaagggatcatttgtttttccaatgcga 51872706  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  51872705 ttattatggtcgattatggct 51872685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 15705634 - 15705786
Alignment:
Q  78 ctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagg 177  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15705634 ctctctctgaatggacttgctacaaatgacaatcttcgcaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgataaggaggagg 15705733  T
Q  178 aaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 230  Q
    ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  15705734 aaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 15705786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3621727 - 3621498
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||| ||    
T  3621727 tcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaac 3621628  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||||||||| || |||||||| || ||| ||| | |  ||   ||||| ||| |||||||||||||||||||||||||| | ||||| ||||| |||    
T  3621627 aaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcgaccttgtgtggtaaggaggaggaaagagaccatttttttttccaa 3621528  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||  ||||||||  ||||||||||||    
T  3621527 tgtgatcattatggtcggttatggctcttg 3621498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 12916011 - 12915787
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||| ||| ||| | ||||| || |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||     
T  12916011 atcactgaagattttaaccaattcttgtggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctctttctgaatagaattgctacaaaga 12915912  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    ||||| | ||||| ||||||||||||  |||||   ||  ||||||||||||||||||||||||||||||||||||| |  |||| ||||||||||||||    
T  12915911 acaacttgcgcaaaaggaatgtccttgcggctaacaatgtttcttgtgcggccttgtgtggtaaggaggaggaaagagacaatttattttttcaatgtga 12915812  T
Q  206 tttttatggtcaattatggctcttg 230  Q
       |||||| |  ||||||||||||    
T  12915811 ccattatgggcggttatggctcttg 12915787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 15649066 - 15649289
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||| ||||||||||||||| || |||||||||||||| || || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  15649066 aatatcaatgcagagtttgatcatttattatggcttaaagcagtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 15649165  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||| ||||||||||  |||||||  |   || |||||   | || ||||||||||||||||||||| | ||||| |||||||||||    
T  15649166 aggataatcttcgcaagcggaatgtcctcgaggctaccaacgttttttgtggtactttatgtggtaaggaggaggaaagagaccatttattttttcaatg 15649265  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  15649266 tgattattatggtcggttatggct 15649289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 50693772 - 50693853
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  50693772 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 50693853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 36951405 - 36951324
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36951405 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtatggcgtctctttctgaatagacttgctacaaa 36951324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 17469142 - 17469223
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||| ||||||||| | ||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||||||||    
T  17469142 atcattttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcatctctttctgaatagacttgctacaaa 17469223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 24059831 - 24059760
Alignment:
Q  38 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaa 109  Q
    |||| ||||| | ||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||||||||    
T  24059831 taaaacggtttcgttaaaagttaatatttttgtttgacgtctctttatgagtagacttgctacaaaggacaa 24059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 17838698 - 17838760
Alignment:
Q  168 aaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 230  Q
    ||||||||| ||||  |||||||||||||||||||||||| |||||||| |||||||||||||    
T  17838698 aaggaggagaaaagggatcatttgttttttcaatgtgattattatggtcgattatggctcttg 17838760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 6614197 - 6614256
Alignment:
Q  167 taaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 226  Q
    |||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  6614197 taaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 6614256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 230
Target Start/End: Complemental strand, 49369991 - 49369763
Alignment:
Q  2 caatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctaca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49369991 caatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttttttggcgtctctttctgaatagacttgctaca 49369892  T
Q  102 aaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaat 201  Q
    |||||||| ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  49369891 aaggacaatcttcgcaagaggaatgtcctttaggctgcagatgcttcttgtgcggccttgtgtggtaaggaggaggaaagggatcatttgttttttcaat 49369792  T
Q  202 gtgatttttatggtcaattatggctcttg 230  Q
    |||||| |||||||| |||||||||||||    
T  49369791 gtgattattatggtcgattatggctcttg 49369763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 41342810 - 41343030
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  41342810 atcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagatttgctacaaagg 41342909  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||| ||||||||||||||||||||| |||||||  ||  ||||||||  ||||| ||||||||||||||||||||  ||||||||||||| ||||||||    
T  41342910 acaatcttcgcaagaggaatgtccttgaggctaccaatgtttcttgtggagccttatgtggtaaggaggaggaaagggatcatttgtttttccaatgtga 41343009  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||  ||||||||    
T  41343010 ttattatggtcggttatggct 41343030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 27030172 - 27029976
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||||    
T  27030172 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttttgaatagacttgctataaagg 27030073  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||| ||||||||||||| |||||    
T  27030072 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagagatcatttgtttttccaatg 27029976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 10004151 - 10003931
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||||||||||    
T  10004151 atcactgcagattttgatcaatttttatggcttaaagcggttcctttaaaagtcaatatttttgcttggcggctctttctgaatagacttgctacaaagg 10004052  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||| |||| ||||||| || |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  |||||||||||||  |||| ||    
T  10004051 ataatcttcgtaagaagaatgtctttgaggctaccaatgtttcttgtggtgctctttgtggtaaggaggaggaaagggatcatttgtttttcgaatgcga 10003952  T
Q  206 tttttatggtcaattatggct 226  Q
     ||||||||||  ||||||||    
T  10003951 cttttatggtcggttatggct 10003931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 24545091 - 24545180
Alignment:
Q  38 taaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgt 127  Q
    ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| |||||    
T  24545091 taaagtggttccgttaaaagttaatatttttgtctggcgtctctttctgaacagacttgctacaaaggataatcttcgaaagagaaatgt 24545180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 28520847 - 28520939
Alignment:
Q  14 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    ||||||| |||||||||| ||||||||||||||| | ||||| || || || ||||| ||||||||||| |||||||||||||||||| ||||    
T  28520847 agagtttcatcaatttttgtggcttaaagcggtttcgttaaaggtgaatatatttgtatggcgtctcttcctgaatagacttgctacagagga 28520939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 37669035 - 37668976
Alignment:
Q  44 ggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  37669035 ggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgatacaaa 37668976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 26996150 - 26996083
Alignment:
Q  39 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||||| |||| ||||| ||||| |||||||| ||||||||||||||||||||||||| | |||||||    
T  26996150 aaagcgattccgttaaaggttaatatttttgtctggcgtctctttctgaatagacttggtgcaaagga 26996083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 230
Target Start/End: Complemental strand, 5557330 - 5557263
Alignment:
Q  163 gtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggctcttg 230  Q
    |||||||||||||||||||  | |||||||||||| ||||||||  |||||||| |||||| ||||||    
T  5557330 gtggtaaggaggaggaaagggaccatttgtttttttaatgtgatcattatggtcgattatgactcttg 5557263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 23603485 - 23603259
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  23603485 aatatcattgcggagtttgatcaatttttatggcttaaagcggttcctttaaaagttaacatttttgtttggcgactctttctgaatagacttgctacta 23603386  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  23603385 aggacaaccttcgcaagaggaatgtccttca-gctacaaatacttcttgtgcggccttgtgtggtaaggaggaggaaagagatcatctgttttttcaatg 23603287  T
Q  203 tgatttttatggtcaattatggctcttg 230  Q
    |||||||||||||| | |||||||||||    
T  23603286 tgatttttatggtcgactatggctcttg 23603259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8595482 - 8595253
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8595482 tcaatatcattgcagagtttgatcaatttctatggcttaaagcggttcctttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 8595383  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  | |||||||||||||||    
T  8595382 aaaggacaatcttcgtaagaggaatatccttcaggctacagatgcttcttgtgcggccttgtgtgctaaggaggaggaaagggaccatttgttttttcaa 8595283  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||| ||||||||  ||||||||||||    
T  8595282 tgtgattattatggtcgtttatggctcttg 8595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 226
Target Start/End: Complemental strand, 42462937 - 42462720
Alignment:
Q  9 actgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggaca 108  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42462937 actgcagagtttgatcaatttttatggcttaaaacggctcccttaaaagttaacatttttgtttggcgtttctttctgaatagacttgctacaaaggaca 42462838  T
Q  109 accttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattt 208  Q
    | |||||||||||||||||||||||||||||| || | ||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||||     
T  42462837 atcttcgcaagaggaatgtccttcaggctacaaatgcatcttgtgcgaccttgtatgataaggaggaggaaagagatcatttgttttttcaatgtgatta 42462738  T
Q  209 ttatggtcaattatggct 226  Q
    ||||||||  ||||||||    
T  42462737 ttatggtcggttatggct 42462720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 23571623 - 23571843
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  23571623 atcactgtagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtatgacgtctctttctgaatagacttgctacaaagg 23571722  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||| |||||||||| |||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  23571723 acaatcttcgcaagacgaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 23571822  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||  ||||||||    
T  23571823 ttattatggtcggttatggct 23571843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48547779 - 48547550
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||    
T  48547779 tcaacatcactgcagagtttaatcaatttttatggcttaaagcagttccattaaaggttaatatttttgtctggcgtctctttctgaatagacttgcaac 48547680  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||||||||| ||||||||||| |||||| ||| | |  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  48547679 aaaggacaacctgcgcaagaggaacgtccttgaggtttccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 48547580  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||  |||||||| |||||||||||||    
T  48547579 tgtgatcattatggtcgattatggctcttg 48547550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 3514904 - 3514684
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  3514904 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggttctttctgaatagacttgctacaaagg 3514805  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||| ||||||   ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  3514804 ataatcttcgcaagaggaatgttcttgaggctatcaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 3514705  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||  ||||||||    
T  3514704 ttattatggtcgcttatggct 3514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 17153806 - 17154029
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| |||||| ||||||||||||||||||    
T  17153806 aatatcaatgcagagtttgatcaatttttatggcttaaagcggttccattaaaagttaatatttttatttggcggctctttatgaatagacttgctacaa 17153905  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  ||||||||||||| |||||    
T  17153906 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagggatcatttgtttttccaatg 17154005  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  17154006 tgattattatggtcggttatggct 17154029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 9819280 - 9819060
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||| || |||||||||||||||||||||||||    
T  9819280 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttatgtttggcggctttttctgaatagacttgctacaaagg 9819181  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||| ||||||||||||||| |||||||  ||  ||||||||  || || ||||||||||||||||| |   ||||||||||||| ||||| ||    
T  9819180 ataatcttcgtaagaggaatgtccttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggacaaggatcatttgtttttccaatgcga 9819081  T
Q  206 tttttatggtcaattatggct 226  Q
     ||||||||||  ||||||||    
T  9819080 cttttatggtcgtttatggct 9819060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 53152132 - 53152307
Alignment:
Q  51 ttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttctt 150  Q
    ||||||||||| |||||||||||| | ||||||| |||| |||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || ||    
T  53152132 ttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgtttttt 53152231  T
Q  151 gtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 226  Q
    |||  || || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||  ||||||||    
T  53152232 gtggtgctttatgtggcaaggaggaggaaagagatcatttgttttttcaatgtgattattatggtcggttatggct 53152307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 42459305 - 42459469
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||| ||| ||| | ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  42459305 atcactgaagattttaaccaattcttatggcttaaggaggttccgttaaaggttaacatttttgtttgacgtctttttctgaatagaattgctacaaagg 42459404  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatact-tcttgtgcggccttgtgtggtaag 170  Q
    ||||| | | ||| |||||||||||| |||||| | | | | ||||||||| ||||||||||||||    
T  42459405 acaacttgcacaaaaggaatgtccttgaggcta-acaaagtatcttgtgcgaccttgtgtggtaag 42459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 16664180 - 16664099
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  16664180 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 16664099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 52196490 - 52196409
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||    
T  52196490 atcaatttttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgcctctttctgaatagacttgctacaaa 52196409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39632858 - 39632931
Alignment:
Q  30 ttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||| | ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  39632858 ttatggttgaaagcggttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 39632931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 10754250 - 10754186
Alignment:
Q  39 aaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    ||||||||||| || || |||||||| |||||||||||||||||| |||||||||||||||||||    
T  10754250 aaagcggttccgttgaaggttaacatctttgtttggcgtctctttatgaatagacttgctacaaa 10754186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 74518 - 74298
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  74518 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 74419  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  74418 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 74319  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||| ||||||||    
T  74318 ttattatggtcagttatggct 74298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 40891766 - 40891986
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40891766 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 40891865  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||||| ||||||||||||||||||||||||||   | ||||||||||| ||||||||    
T  40891866 acaaccttcgcaagaggaatgtccttgaggctacctatgtttcttgtggggccttgtgtggtaaggaggaggaaatggaccatttgtttttccaatgtga 40891965  T
Q  206 tttttatggtcaattatggct 226  Q
    || ||||||||| ||||||||    
T  40891966 ttattatggtcagttatggct 40891986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 587004 - 586784
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  587004 atcactgcagagtttgatcgttttttatggcttaaagcggttcccttaaaggttaatatttttgtttggcgtctctttttgaatagacttgctacaaagg 586905  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||| ||||| || |||||||||||| |||||||  ||  |||  ||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  586904 acaatcttcgtaaaaggaatgtccttgaggctaccaatgtttcaagtggggccttatgtggtaaggaggaggaaagggatcatttgttttttcaatgtga 586805  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  586804 ttattatggtcgattatggct 586784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 37075589 - 37075812
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| | ||||||| |||| ||||||||||||    
T  37075589 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggaggctctttcagaatcgacttgctacaa 37075688  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||| ||||||||||||||  |||||||||||||||||||    
T  37075689 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggcaaggaggaggaaagggatcatttgttttttcaatg 37075788  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  37075789 tgattattatggtcggttatggct 37075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 12121806 - 12121586
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  12121806 atcactgcaaattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 12121707  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || |||||||||||||||||||   ||||||||||||| ||||| ||    
T  12121706 ataatcttcgcaagaggaatgttctagaggataccaatgtttcttgtggtgctttatgtggtaaggaggaggaaatggatcatttgtttttccaatgcga 12121607  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  12121606 ttattatggtcgattatggct 12121586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 24819917 - 24819697
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||    
T  24819917 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaagg 24819818  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||| |||||||| |||||| |||||||  |   ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  24819817 ataatcttcgtaagaggaacgtccttgaggctaccaacgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 24819718  T
Q  206 tttttatggtcaattatggct 226  Q
     | ||||||||  ||||||||    
T  24819717 ctattatggtcgtttatggct 24819697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 36575396 - 36575604
Alignment:
Q  18 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||| || ||||| |    
T  36575396 tttgatcaatttttatggcttaaagcggttcccttaaaagtcaatatttttgtttggcggctttttctgaatagacttgctacaaaggataatcttcgta 36575495  T
Q  118 agaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtca 217  Q
    |||||||||||||| |||||||  ||  ||||||||  ||  | ||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||     
T  36575496 agaggaatgtccttgaggctaccaatgtttcttgtggtgctctatgtggtaaggaggaggaaagggatcatttgtttttccaatgcgacttttatggtcg 36575595  T
Q  218 attatggct 226  Q
     ||||||||    
T  36575596 tttatggct 36575604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 9403131 - 9403347
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||         |||||| ||||||||||||    
T  9403131 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttgg-------acctgaatcgacttgctacaa 9403223  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  9403224 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 9403323  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  9403324 tgattattatggtcggttatggct 9403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 34982070 - 34981847
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||| ||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| | ||||||||||    
T  34982070 aatatcaatgcagagtttgatcagtttttatggcttaaagcggtccctttaaaggttaatatttttgtttggaggctctttctgaatcgccttgctacaa 34981971  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  |   ||  ||||  || || ||||||||||||||||||||| | ||||| || ||||||||    
T  34981970 aggataatcttcgcaagaggaatgtcctcgaggctaccaacgttttctgtggtgctttatgtggtaaggaggaggaaagagaccatttattctttcaatg 34981871  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  34981870 tgattattatggtcggttatggct 34981847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20705489 - 20705694
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||||| ||    
T  20705489 tcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaac 20705588  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| |||    
T  20705589 aaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaa 20705688  T
Q  201 tgtgat 206  Q
    ||||||    
T  20705689 tgtgat 20705694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 20873533 - 20873738
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    ||||||||||||||||||||  ||||||||||||||||||| | || || || || ||||| |||||||| |||||||| ||||||||||||||||| ||    
T  20873533 tcaatatcactgcagagtttactcaatttttatggcttaaaccagtcccattgaaggttaatatttttgtatggcgtctttttctgaatagacttgcaac 20873632  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||| || || |||||||| || || ||| ||| | |  ||    |||||||||| |||||||||||||||||||||||| | ||||||||||| |||    
T  20873633 aaaggataatctgcgcaagagaaacgttcttgaggtttctaatgtggcttgtgcggctttgtgtggtaaggaggaggaaagagaccatttgtttttccaa 20873732  T
Q  201 tgtgat 206  Q
    ||||||    
T  20873733 tgtgat 20873738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 22865766 - 22865847
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  22865766 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 22865847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 47549050 - 47548969
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47549050 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47548969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 47553493 - 47553412
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  47553493 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 47553412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 27987585 - 27987669
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  27987585 atcattttttgtggcataaagcggttccgttaaaggttaatatttttgtatggcgtctctttctgaatagacttgctacaaagga 27987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 27869099 - 27869020
Alignment:
Q  27 tttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    ||||||||||| |||||||||   ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27869099 tttttatggctaaaagcggttatgttaaaggttaacatatttgtttggcgtctctttctgaatagacttgctacaaagga 27869020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 18815411 - 18815516
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    |||| ||||| |||| |||||||||||| ||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || ||  | |||||    
T  18815411 atcattttttgtggcataaagcggttccgttaaaggttaatatatttgtctagcgtctctttctgaatagacttgctacaaaggataatctgaggaagag 18815510  T
Q  122 gaatgt 127  Q
    ||||||    
T  18815511 gaatgt 18815516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 8457213 - 8457286
Alignment:
Q  33 tggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||| |||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||    
T  8457213 tggcataaagcggtttcgttaaaggttaatatttttgtctggcgtctctttctgaatagacttgatacaaagga 8457286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 5196834 - 5196753
Alignment:
Q  25 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    ||||||| |||||||| ||| || | |||||||| || || ||| | || || |||||||| ||||||||||||||||||||    
T  5196834 aatttttgtggcttaaggcgatttcgttaaaagtgaatatctttatctgacgactctttctaaatagacttgctacaaagga 5196753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 58393 - 58622
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  58393 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctac 58492  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    ||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||  | | |||||||||||||    
T  58493 aaaggacaaccttcgcaagaggaatgtccttgaggctaccaatatttcttgtgcggccttgtgtggtaaggaggaggaaagggaccgtttgttttttcaa 58592  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    |||||   ||||||||  ||||||||||||    
T  58593 tgtgacaattatggtcggttatggctcttg 58622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 5e-86; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 6 - 230
Target Start/End: Complemental strand, 11266245 - 11266021
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11266245 atcactgcagagtttggtcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcgtctctttctgaatagacttgctacaaagg 11266146  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||||||||||||||||||||||||| |||||||  ||  |||||| |||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  11266145 acaaccttcgcaagaggaatgtccttgaggctactaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaatgtga 11266046  T
Q  206 tttttatggtcaattatggctcttg 230  Q
     | ||||||||  ||||||||||||    
T  11266045 ctattatggtcggttatggctcttg 11266021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 27891923 - 27891694
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||| |||| ||||||||||||||||||||| ||    
T  27891923 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttccattaaaggttaatatttttgtctggcatctctttctgaatagacttgcaac 27891824  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||||||||| ||||||||||| |||||||||| | |  ||   ||||| |||||||||||||||||||||||||||||  | |||||||||||||||    
T  27891823 aaaggacaacctgcgcaagaggaacgtccttcaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttttttcaa 27891724  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||  |||||||| |||||||||||||    
T  27891723 tgtgatcattatggtcgattatggctcttg 27891694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 215
Target Start/End: Original strand, 5824972 - 5825180
Alignment:
Q  7 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  5824972 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 5825071  T
Q  107 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 206  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || ||||||||||||||||||||  ||||||||||||||| |||||||    
T  5825072 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaagggatcatttgttttttcgatgtgat 5825171  T
Q  207 ttttatggt 215  Q
    | |||||||    
T  5825172 tattatggt 5825180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 6678577 - 6678798
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  || |||||||||||| | |||||||||||| ||||||||||||    
T  6678577 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttagaag--aatatttttgtttggaggctctttctgaatcgacttgctacaa 6678674  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || | ||||||||||||||||||  |||||||||||||||||||    
T  6678675 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatatggtaaggaggaggaaagtgatcatttgttttttcaatg 6678774  T
Q  203 tgatttttatggtcaattatggct 226  Q
    ||||| ||||||||  ||||||||    
T  6678775 tgattattatggtcggttatggct 6678798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 29150504 - 29150301
Alignment:
Q  26 atttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaat 125  Q
    ||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||| || ||||||||||||||||||||||||||| | ||||| ||||||    
T  29150504 atttttatggcttaaggcggttccgttaaaggttaatatttttgtttggtgtcttttcctgaatagacttgctacaaaggacaacttgcgcaaaaggaat 29150405  T
Q  126 gtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggc 225  Q
    |||| | ||||||   ||   |||||||||||||| ||||||||||| ||||||||| | ||||| ||||||||||||||   |||||| |  |||||||    
T  29150404 gtcc-tgaggctaacaatgtatcttgtgcggccttctgtggtaaggacgaggaaagagaccatttattttttcaatgtgaccattatggccggttatggc 29150306  T
Q  226 tcttg 230  Q
    |||||    
T  29150305 tcttg 29150301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 29322997 - 29322916
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  29322997 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 29322916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 31962686 - 31962774
Alignment:
Q  18 tttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||| ||||||||||||||| |||| |||||| ||||| |||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  31962686 tttgctcaatttttatggctaaaagtggttccgttaaaggttaacatatttgtttggcatctctatctgaatagacttgctacaaagga 31962774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 38931973 - 38931892
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | |||||||||||  | || |||||||| |||||||||| |||||||||||||||||||||||||||    
T  38931973 atcaatttttatggttgaaagcggttccgctgaaggttaacatatttgtttggcatctctttctgaatagacttgctacaaa 38931892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 103
Target Start/End: Complemental strand, 8896447 - 8896369
Alignment:
Q  25 aatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    ||||||||||| | ||||||||||  || || ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8896447 aatttttatggttgaaagcggttctgttgaaggttaacatagttgtttggcgtctctttctgaatagacttgctacaaa 8896369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 226
Target Start/End: Original strand, 10462244 - 10462359
Alignment:
Q  111 cttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgattttt 210  Q
    ||||||||||||||||||||  |||||||  ||  || |||||  || || ||| ||||||||||||||||  ||||||||||||| |||||||||| ||    
T  10462244 cttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtagtaaggaggaggaaagggatcatttgtttttccaatgtgattatt 10462343  T
Q  211 atggtcaattatggct 226  Q
    ||||||  ||||||||    
T  10462344 atggtcggttatggct 10462359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 38938684 - 38938468
Alignment:
Q  14 agagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaacctt 113  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  38938684 agagtttgatcagtttttatggcttaaagcggttcccttaaaaattaacatttttgtttggcgtctctttctgaatagacttactacaaaggacaatctt 38938585  T
Q  114 cgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatg 213  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||| |||||    
T  38938584 cgcaagaggaatgtctttcaggctacatatgcttcttgtgcggccttatgtggtaaggaggaggaaagggaccatttattttttcaatgtgattattatg 38938485  T
Q  214 gtcaattatggctcttg 230  Q
    ||| |||||| ||||||    
T  38938484 gtcgattatgactcttg 38938468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 30276109 - 30275892
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||    
T  30276109 atcactgcagattttgatcaatttttatggcttaaagcggttcccttaaaagttaatatttttgtttggaggctctttctgaatagactcgctacaaagg 30276010  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||| ||||||||||||| ||||||||    
T  30276009 ataatcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagagatcatttgtttttccaatgtga 30275910  T
Q  206 tttttatggtcaattatg 223  Q
    || |||||||| ||||||    
T  30275909 ttattatggtcgattatg 30275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 32350097 - 32349874
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||||||||||||    
T  32350097 aatatcactgcagattttgatcaatttttatggcttaaagcgattcccttaaaagttaatatttttgtttcgtggctctttctgaatagacttgctacaa 32349998  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| |  ||||||||||||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| |||||    
T  32349997 aggatattcttcgcaagaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatg 32349898  T
Q  203 tgatttttatggtcaattatggct 226  Q
     |||| |||||||| |||||||||    
T  32349897 cgattattatggtcgattatggct 32349874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 3 - 215
Target Start/End: Complemental strand, 23385066 - 23384854
Alignment:
Q  3 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaa 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  23385066 aatatcactgcagagtttgatcaatttttatggcttaaagcggttcctttaaaagttaatatttttgtttggcggctctttctgaatagacatgctacaa 23384967  T
Q  103 aggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||| || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||| |||||||||||  |||||||||| || |||||    
T  23384966 aggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaagaggaggaaagtgatcatttgttcttccaatg 23384867  T
Q  203 tgatttttatggt 215  Q
    ||||| |||||||    
T  23384866 tgattattatggt 23384854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 21963627 - 21963419
Alignment:
Q  7 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21963627 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21963528  T
Q  107 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 206  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||   ||||||||||||||| |||||||    
T  21963527 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaaaggatcatttgttttttcgatgtgat 21963428  T
Q  207 ttttatggt 215  Q
    | |||||||    
T  21963427 tattatggt 21963419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 21964812 - 21964639
Alignment:
Q  7 tcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagga 106  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||    
T  21964812 tcactgcagagtttgatcaatttttatggcttaaagcggtccctttaaaagttaatatttttgtttggaggctctttctgaatcgacttgctacaaagga 21964713  T
Q  107 caaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaa 180  Q
     || ||||||||||||||||||||  |||||||  ||  || |||||  || || |||||||||||||||||||    
T  21964712 taatcttcgcaagaggaatgtcctcgaggctaccaatgttttttgtggtgctttatgtggtaaggaggaggaaa 21964639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 226
Target Start/End: Original strand, 27914653 - 27914823
Alignment:
Q  56 agttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcg 155  Q
    |||||| ||||||||||| ||  |||||||||||||||||||||||||||| || ||||||||||||||||||||  |||||||  ||  || || ||      
T  27914653 agttaatatttttgtttgacggttctttctgaatagacttgctacaaaggataatcttcgcaagaggaatgtcctcgaggctaccaatgttttttatggt 27914752  T
Q  156 gccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 226  Q
    ||  | ||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||  ||||||||    
T  27914753 gctatatgtggtaaggaggaggaaagggatcatttgtttttccaatgtgattattatggtcggttatggct 27914823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 1258665 - 1258584
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||||||| || || |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  1258665 atcaatttttatggttaaaagcggttccgttgaaggttaacatatttgttttgcgtctctttctgaatagacttgctacaaa 1258584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 22300966 - 22300858
Alignment:
Q  23 tcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagagg 122  Q
    ||||||||||||| | |||| |||||| || || |||||||| |||||  | ||||||||||||||||||| |||||||||||| ||  | ||||| ||     
T  22300966 tcaatttttatggttaaaagtggttccgttgaaggttaacatatttgtaagacgtctctttctgaatagacctgctacaaaggataatttgcgcaaaaga 22300867  T
Q  123 aatgtcctt 131  Q
    |||||||||    
T  22300866 aatgtcctt 22300858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 26077728 - 26077948
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  26077728 atcactgcagattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 26077827  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    |||| |||||||| |||||||| ||| |||||||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  26077828 acaatcttcgcaaaaggaatgttcttgaggctaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 26077927  T
Q  206 tttttatggtcaattatggct 226  Q
     | ||||||||  ||||||||    
T  26077928 atattatggtcgcttatggct 26077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 31423238 - 31423431
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||||| ||    
T  31423238 tcaacatcactgcagagtttaatcaatttttatggcttaaagcggttcccttaaaggttaatatttttgtctgacgtctctttctgaatagacttgcaac 31423337  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttt 194  Q
    |||| ||||||||||||||||||| |||||| | | |||  ||  |||||| |||||||||||||||||||||||||||||  | |||||||||    
T  31423338 aaagaacaaccttcgcaagaggaacgtccttgaaggtaccaatgtttcttgcgcggccttgtgtggtaaggaggaggaaagggaccatttgttt 31423431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 29532561 - 29532381
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |  |||| ||    
T  29532561 atcaatttttatggcttaaagcggtaccattaaatgttaacatttttgtctggcgtctctttctgaatagacttgctacaaaggacaatttaagcaaaag 29532462  T
Q  122 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    |||||||||||  ||||   |||  ||||||| ||||||||||| |||||||||||||||  |||||||||| ||||||||    
T  29532461 gaatgtccttccagctaataatatatcttgtgtggccttgtgtgataaggaggaggaaagggatcatttgttctttcaatg 29532381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 216
Target Start/End: Original strand, 26390260 - 26390454
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    ||||||||||||||||||  ||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |  |||  ||    
T  26390260 atcaatttttatggcttacggcggtaccattaaaggttaacatttttgtctggcgtctctttctgaatagacttgctacaacggacaatttaagcataag 26390359  T
Q  122 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtc 216  Q
    ||||||||||| |||||   |||  |||| |  ||||||||||||||||||||| |||||    |||||||| |||||||| |||  ||||||||    
T  26390360 gaatgtccttccggctaataatatgtcttatatggccttgtgtggtaaggaggacgaaaggggccatttgttctttcaatgcgatcattatggtc 26390454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 10801698 - 10801779
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||    
T  10801698 atcaatttttatggttgaaagcagttccgttgaaggttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 10801779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 2959748 - 2959812
Alignment:
Q  162 tgtggtaaggaggaggaaagatatcatttgttttttcaatgtgatttttatggtcaattatggct 226  Q
    ||||||||||||||||| ||| | ||||| || ||||||||||||| ||||||||  ||||||||    
T  2959748 tgtggtaaggaggaggacagagaccatttattctttcaatgtgattattatggtcggttatggct 2959812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 667490 - 667285
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  667490 tcaacatcactgcagagtttaatcaatttttatggcttaaagtggttcccttaaaggttaacatttttgtttggcgtctctttctgaatagacttgctac 667391  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||  |||||||||          |||||||||||||||||  |  ||||||||||||||    
T  667390 aaaggacaaccttcgcaagaggaatgtacttgaggctacaaatgtttcttgtgc----------ggtaaggaggaggaaagggactatttgttttttcaa 667301  T
Q  201 tgtgatttttatggtc 216  Q
    ||||| | ||||||||    
T  667300 tgtgactattatggtc 667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 18295398 - 18295618
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  18295398 atcactgcatattttgatcaatttttatggcttaaagcggtacccttaaaagttaatatttttgtttggcggctctttctgaatagacttgctacaaagg 18295497  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtga 205  Q
    | || ||||||||||||||||| ||  ||| |||  ||  ||||||||  || || ||||||||||||||||||||  ||||||||||||| ||||| ||    
T  18295498 ataatcttcgcaagaggaatgttctagaggttaccaatgtttcttgtggtgctttatgtggtaaggaggaggaaagggatcatttgtttttccaatgcga 18295597  T
Q  206 tttttatggtcaattatggct 226  Q
    || |||||||| |||||||||    
T  18295598 ttattatggtcgattatggct 18295618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 28604884 - 28605113
Alignment:
Q  1 tcaatatcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctac 100  Q
    |||||||||||||||||||| |||||||||||||||||||| |||| || ||||| ||||| |||||||| |||||||| ||||||||||||||||| ||    
T  28604884 tcaatatcactgcagagtttaatcaatttttatggcttaaaccggtcccattaaaggttaatatttttgtatggcgtctttttctgaatagacttgcaac 28604983  T
Q  101 aaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaa 200  Q
    |||||||||||| || |||||||| || ||| ||| | |  ||   ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||    
T  28604984 aaaggacaacctgcgtaagaggaacgttcttgaggtttccaatgtgtcttgcgcggccttgtgtggtaaggaggaggaaagagaccatttgtttttccaa 28605083  T
Q  201 tgtgatttttatggtcaattatggctcttg 230  Q
    ||||||  ||||||||  ||||||||||||    
T  28605084 tgtgatcattatggtcggttatggctcttg 28605113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 2894457 - 2894261
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||    
T  2894457 atcactgcagattttgatcaatttctatggcttaaagcggttcccttaaaagttaatatttttgtttggcggctttttctgaatagacttgctacaaagg 2894358  T
Q  106 acaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatg 202  Q
    | || ||||| ||||||||| ||||| |||| ||  ||  ||||||||  || || |||||||| |||||||| |   ||||||||||||| |||||    
T  2894357 ataatcttcgtaagaggaatatccttgaggcaaccaatgtttcttgtggtgctttatgtggtaacgaggaggacatggatcatttgtttttccaatg 2894261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 7218368 - 7218552
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | || || ||    
T  7218368 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggataatttgcgtaaaag 7218467  T
Q  122 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 206  Q
    ||||||| || ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  7218468 gaatgtctttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 7218552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 17228156 - 17228031
Alignment:
Q  6 atcactgcagagtttgatcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaagg 105  Q
    ||||||| ||||||| |||| ||||| ||||||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||||||||||||||||||    
T  17228156 atcactgaagagtttcatcattttttgtggcttaaagcagttccgttaaatgtgaacatatttgtctggcgtctctttctaaatagacttgctacaaagg 17228057  T
Q  106 acaaccttcgcaagaggaatgtcctt 131  Q
    ||||  | ||||| ||||||||||||    
T  17228056 acaatttgcgcaaaaggaatgtcctt 17228031  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 5391535 - 5391616
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaa 103  Q
    |||||||||||||| | ||||||| ||| || || ||||||||||||||||||||  | ||||||||||||||||| |||||    
T  5391535 atcaatttttatggttgaaagcggctccgttgaaggttaacatttttgtttggcgcttatttctgaatagacttgcaacaaa 5391616  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 9759578 - 9759701
Alignment:
Q  79 tctttctgaatagacttgctacaaaggacaaccttcgcaagaggaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggagga 178  Q
    |||||| ||||||||||||||||||||| || || ||||| ||||||||| || |||| ||   |   | ||||||||| ||| ||||||||||||| ||    
T  9759578 tctttccgaatagacttgctacaaaggataatctgcgcaaaaggaatgtctttgaggccacttttgtgtattgtgcggctttgcgtggtaaggaggatga 9759677  T
Q  179 aagatatcatttgttttttcaatg 202  Q
    |||  | ||| |||||||||||||    
T  9759678 aagggaccatctgttttttcaatg 9759701  T

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Target: scaffold0003 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 224744 - 224928
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  | || || ||    
T  224744 atcaatttttatggcttaaggcggttccgttaaaggttaacatttttgtttggcgtctttttctgaatagacttgctacaaaggacaatttgcgtaaaag 224843  T
Q  122 gaatgtccttcaggctacagatacttcttgtgcggccttgtgtggtaaggaggaggaaagatatcatttgttttttcaatgtgat 206  Q
    |||||||||| ||||||   ||   | |||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||    
T  224844 gaatgtccttgaggctaacaatgtatattgtgcggccttgtgtggtaaggaggaggaaagagaccatttatttttccaatgtgat 224928  T

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Target: scaffold0289 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 11269 - 11164
Alignment:
Q  22 atcaatttttatggcttaaagcggttcccttaaaagttaacatttttgtttggcgtctctttctgaatagacttgctacaaaggacaaccttcgcaagag 121  Q
    |||| ||||| ||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||| |||||||||| || || || |||||    
T  11269 atcattttttgtggcacaaagaggttccgttaaaggttaatatatttgtatgatgtctcttcctgaatagactttctacaaaggataatctgcggaagag 11170  T
Q  122 gaatgt 127  Q
     |||||    
T  11169 aaatgt 11164  T

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