View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_44 (Length: 420)
Name: NF10855A_low_44
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_44 |
 | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 7927278 - 7926876
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||| | |
|
|
| T |
7927278 |
cgaggttgctttctttagggaataacaaggtttgtgtttgcggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagagggtctcagtt |
7927179 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
7927178 |
ggtggatgattgtgcaccttttaatgattttattgaagatagagttttgattgatttacctttatgtgggaggaagtttacttggtttaagggggatgga |
7927079 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatc |
310 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
7927078 |
cgctcgatgagtagattggataggttcttgctctctgaagaatggtgtttggtgtggcctaactgcattcaggtggcacacttaagaggtttatctgatc |
7926979 |
T |
|
| Q |
311 |
actgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttgt |
410 |
Q |
| |
|
|||||||| | || || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
7926978 |
actgtcctatcgtattgtctgtggatgaagagaattggggtccgagaccggtgcgtctgttgaagtgttggcaagatatgcctggctattatgattttgt |
7926879 |
T |
|
| Q |
411 |
tcg |
413 |
Q |
| |
|
||| |
|
|
| T |
7926878 |
tcg |
7926876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 8302697 - 8302294
Alignment:
| Q |
10 |
tcgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcagg |
109 |
Q |
| |
|
|||||||||||||||||||| ||||| || || |||||||| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
8302697 |
tcgaggttgctttctttaggtaataataaagtgtgtgtttgtggagattttaacactgtgcggtcagttgaagaaaggcggtcggttaggggttctcagg |
8302598 |
T |
|
| Q |
110 |
tggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgg |
209 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
8302597 |
tggtagctgattgtgcaccttttaatgattttattgaagatcgagttttgattgatttaccgctaagtgggaggaagtttacttggtataagggggatgg |
8302498 |
T |
|
| Q |
210 |
acgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || || |||||||| ||||||||| |
|
|
| T |
8302497 |
tcgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtatggtgtggcctaattgcattcagatagctcagttaagaggtttatctgat |
8302398 |
T |
|
| Q |
310 |
cactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttg |
409 |
Q |
| |
|
|| ||||| | ||||| ||||||||||||||||||||||| ||||||||| ||||||| |||| || ||||||| ||||||||||||| |||||||| |
|
|
| T |
8302397 |
cattgtcccattgtgttgtctgtggatgaagagaattgggggccgagaccggtgcgtctcctgaaatgttggcaagatatgcctggttataatgattttg |
8302298 |
T |
|
| Q |
410 |
ttcg |
413 |
Q |
| |
|
|||| |
|
|
| T |
8302297 |
ttcg |
8302294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 218 - 413
Target Start/End: Original strand, 41662822 - 41663017
Alignment:
| Q |
218 |
tgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||| || |
|
|
| T |
41662822 |
tgagtaggttggataggttcttgctctctgaagaatggtgtttggtatggcctaattgcattcaggtggctcagttaagaggattatctaatcactgccc |
41662921 |
T |
|
| Q |
318 |
tttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttgttcg |
413 |
Q |
| |
|
| | ||||| ||||||||||||||||||||||| ||||||| | |||||||| |||| || ||||||| |||||||| |||| |||||||||||| |
|
|
| T |
41662922 |
tattgtgttgtctgtggatgaagagaattgggggccgagactggtgcgtctactgaaatgttggcaagatatgcctgattataatgattttgttcg |
41663017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 398
Target Start/End: Original strand, 13876878 - 13877118
Alignment:
| Q |
157 |
ttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggt |
256 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||| |||| |||||||||||| || || |||||||||||||| ||||| ||| | || |||| |||| |
|
|
| T |
13876878 |
ttgattgatttacctttatgtggccgaaagtttacctggtttaagggggatggtcgatctatgagtaggttggacaggtttttgttatccgaagcgtggt |
13876977 |
T |
|
| Q |
257 |
gtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgag |
356 |
Q |
| |
|
| ||| ||||||| ||||| |||||||| | || ||||| || | || ||||| |||||| | ||||| || || ||||| || || ||||| ||||| |
|
|
| T |
13876978 |
gcttgttgtggccaaattgtattcaggttggtcacttaaggggtctttcagatcattgtcctattgtgttgtcggtagatgaggaaaactgggggccgag |
13877077 |
T |
|
| Q |
357 |
accgctgcgtctattgaagtgctggcaaggtatgcctggtta |
398 |
Q |
| |
|
| || |||| ||||||| || ||||||| |||||||||||| |
|
|
| T |
13877078 |
a-cgttgcgattattgaaatgttggcaagatatgcctggtta |
13877118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 413
Target Start/End: Complemental strand, 20827014 - 20826791
Alignment:
| Q |
190 |
acttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcac |
289 |
Q |
| |
|
||||||| |||||||||||| || |||||||| ||||||||||| || ||| | || |||| |||||| |||||||||||||||| || ||||| || | |
|
|
| T |
20827014 |
acttggtttaagggggatgggcggtcgatgagcaggttggatagatttttgttgtcagaaggttggtgtctggtgtggcctaattgtatgcaggttgctc |
20826915 |
T |
|
| Q |
290 |
aattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtat |
389 |
Q |
| |
|
| || | || | ||| |||| ||||| | ||||| || || |||||||| |||||||| | ||| ||| ||||||| |||| || ||||||| || |
|
|
| T |
20826914 |
atctacggggtctgtctaatcattgtccgattgtgttgtcagtagatgaagaaaattggggactgaggccgttgcgtcttctgaaatgttggcaagacat |
20826815 |
T |
|
| Q |
390 |
gcctggttattttgattttgttcg |
413 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
20826814 |
gcctggttataatgattttgttcg |
20826791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 103090 - 103492
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || |||||| | |
|
|
| T |
103090 |
cgaggttgctttctttagggaataacaaggtttgtgtttgcggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagaggatctcagtt |
103189 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
103190 |
ggtggatgattgtgcaccttttaatgattttattgaagatagagttttgattgatttaccattatgtgggaggaagtttacttggtttaagggggatgga |
103289 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatc |
310 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
103290 |
cgctcgatgagtagattggataggttcttgctctctgaagaatggtgtttggtgtggcccaactgcattcaggtggcacacttaagaggtttatctgacc |
103389 |
T |
|
| Q |
311 |
actgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttgt |
410 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| |||| ||||||||| |
|
|
| T |
103390 |
actgtcctatagtattgtctgtggatgaagagaattggggtccgagaccggtgcgtctgttgaagtgttggcaagatatgcctggctattatgattttgt |
103489 |
T |
|
| Q |
411 |
tcg |
413 |
Q |
| |
|
||| |
|
|
| T |
103490 |
tcg |
103492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 413
Target Start/End: Original strand, 4935375 - 4935777
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
4935375 |
cgaggttgctttctttagggaataacaaggtttgtgtttgtggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagaggttctcagtt |
4935474 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
4935475 |
ggtggatgattgtgcaccttttaatgattttattgaagatagagttttgattgatttacctttatgtgggaggaagtttacttggtttaagggggatggt |
4935574 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatc |
310 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
4935575 |
cgttcgatgagtagattggataggttcttgctttctgaagaatggtgtctggtgtggccgaactgcattcaggtggcacatttacgaggtttatctgatc |
4935674 |
T |
|
| Q |
311 |
actgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttgt |
410 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| ||| ||||||||| |
|
|
| T |
4935675 |
actgtcctatagttttgtctgtagatgaagagaattggggtccgagaccggtgcgtctgttgaagtgttggcaagatatgcctggctatgatgattttgt |
4935774 |
T |
|
| Q |
411 |
tcg |
413 |
Q |
| |
|
||| |
|
|
| T |
4935775 |
tcg |
4935777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 413
Target Start/End: Complemental strand, 29970868 - 29970465
Alignment:
| Q |
10 |
tcgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcagg |
109 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| |||||||| || ||||||||||| || |||||||||||||||| |
|
|
| T |
29970868 |
tcgaggttgctttctttaggtaataataaggtttgtgtttgtggagattttaacactgtgcggtcagttgaagaaaggcggtcagttaggggttctcagg |
29970769 |
T |
|
| Q |
110 |
tggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgg |
209 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
29970768 |
tggtagctgattgtgcaccttttaatgattttattgaagatcgagttttgattgatttaccgctaagtgggaggaagtttacttggtataagggggatgg |
29970669 |
T |
|
| Q |
210 |
acgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgat |
309 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || || |||||||| ||||||||| |
|
|
| T |
29970668 |
tcgtttgatgagtaggttggataggttcttgctttctgaagaatggtgtatggtgtggcctaattgcattcaggtagctcagttaagaggtttatctgat |
29970569 |
T |
|
| Q |
310 |
cactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttg |
409 |
Q |
| |
|
|| ||||| | ||||| ||||||||||| ||||||||||| ||||||||| ||||||| |||| || ||||||| |||||| |||||| |||||||| |
|
|
| T |
29970568 |
cattgtcccattgtgttgtctgtggatgaggagaattgggggccgagaccggtgcgtctcctgaaatgttggcaagatatgccaggttatactgattttg |
29970469 |
T |
|
| Q |
410 |
ttcg |
413 |
Q |
| |
|
|||| |
|
|
| T |
29970468 |
ttcg |
29970465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 4 - 414
Target Start/End: Complemental strand, 17723535 - 17723125
Alignment:
| Q |
4 |
ctttcatcgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggtt |
103 |
Q |
| |
|
||||| |||||||||||||||||||| | || ||||||||||| || ||||||||||| || |||||||| || || |||||||| || |||||||||| |
|
|
| T |
17723535 |
ctttcttcgaggttgctttctttaggtagtagtaaggtttgtgtgtgtggggattttaatactgtgcggtcagttgatgaaaggcgctctgttaggggtt |
17723436 |
T |
|
| Q |
104 |
ctcaggtggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataaggg |
203 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
17723435 |
ctcaggtggttgatgattgtgcaccttttaatgattttattgaagatagagttttaattaatttaccgttatgtgggaggaagtttacttggtataatgg |
17723336 |
T |
|
| Q |
204 |
ggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggatta |
303 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||| ||| ||||||| || || |||||||||||| |
|
|
| T |
17723335 |
ggatggccgttcgatgagtacattggacaggttcttgctatctgaagaatggtgcatggtgtggcctacttgtcttcaggttgctcagttaagaggatta |
17723236 |
T |
|
| Q |
304 |
tctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttg |
403 |
Q |
| |
|
|||||||| || ||| | || || ||||||||||| |||||||||||||| | ||| ||||||| ||||| || ||||||| ||||||||||||| || |
|
|
| T |
17723235 |
tctgatcattgccctattgtcttgactgtggatgaaaagaattggggtccgcggccggtgcgtcttttgaaatgttggcaagatatgcctggttatagtg |
17723136 |
T |
|
| Q |
404 |
attttgttcga |
414 |
Q |
| |
|
||||||||||| |
|
|
| T |
17723135 |
attttgttcga |
17723125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 17058169 - 17058105
Alignment:
| Q |
253 |
tggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcc |
317 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
17058169 |
tggtgcttggtgtggccgaattgtattcaggtggcacaattgcgaggattatctgatcattgtcc |
17058105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 356
Target Start/End: Complemental strand, 20658663 - 20658463
Alignment:
| Q |
156 |
tttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatgg |
255 |
Q |
| |
|
||||||||| |||||||| |||||||| || |||||||||| || ||||| ||| | ||||||||||| | ||| |||| || | || |||| ||| |
|
|
| T |
20658663 |
tttgattgatctaccgttgtgtgggagtaattttacttggttcaaaggggacggaagatcgatgagtagaattgatcggttttttatttcgaaagagtgg |
20658564 |
T |
|
| Q |
256 |
tgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccga |
355 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||| | ||||| || || ||||| ||||| || | |||||||| ||| | ||||||||||| |||| |
|
|
| T |
20658563 |
tgtttagtttggcccaattgcattcaggttgcgcaacttagaggtttgtcagatcattgtccgttgattttatctgttgataaggagaattgggggccga |
20658464 |
T |
|
| Q |
356 |
g |
356 |
Q |
| |
|
| |
|
|
| T |
20658463 |
g |
20658463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 354
Target Start/End: Complemental strand, 8773504 - 8773394
Alignment:
| Q |
244 |
tctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagaga |
343 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| ||||| || || || ||| |||| |||||| | ||||||||||| | | || ||||||||||| | |
|
|
| T |
8773504 |
tctgaagattggtgcttagtgtggccgaattgtattcaagtcgctcatttacgaggtttatctaaccactgtcctttgattctgtcggtggatgaagaaa |
8773405 |
T |
|
| Q |
344 |
attggggtccg |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
8773404 |
attggggtccg |
8773394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 410
Target Start/End: Original strand, 19917471 - 19917878
Alignment:
| Q |
3 |
actttcatcgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggt |
102 |
Q |
| |
|
|||||| |||||||| || |||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19917471 |
actttcttcgaggttactctctttagggaataacaaggtttgtgtttgtggggatttcaacactgtgcggtctgttgaagaaaggcgttcggttaggggt |
19917570 |
T |
|
| Q |
103 |
tctcaggtggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagg |
202 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
19917571 |
tctcagttggtagaggattgtgcaccttttaatgactttattgaagatagaggcttgattgatttaccgttatgtgggaggaagtttacttggtttaagg |
19917670 |
T |
|
| Q |
203 |
gggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggatt |
302 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| || |
|
|
| T |
19917671 |
ggaatggccgttcgatgagtaggttggataggttcttgctctctgaagattggtgtttggtgtggcctaattgtgttcaggtggcacacttaagaggctt |
19917770 |
T |
|
| Q |
303 |
atctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttatttt |
402 |
Q |
| |
|
||||||||| |||||| |||| || ||||||||||||||||| ||||||||||||||| ||||||| |||||||| | ||||| |||||| |||| || | |
|
|
| T |
19917771 |
atctgatcattgtcctatagtattgtctgtggatgaagagaactggggtccgagaccggtgcgtctgttgaagtgttagcaagatatgccgggtttttat |
19917870 |
T |
|
| Q |
403 |
gattttgt |
410 |
Q |
| |
|
|||||||| |
|
|
| T |
19917871 |
gattttgt |
19917878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 298
Target Start/End: Complemental strand, 2367102 - 2366815
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
2367102 |
cgaggttgctttctttagggaataacaaggtttgtgtttgtggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagaggttctcagtt |
2367003 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2367002 |
ggtggatgattgtgcaccttttaatgattttattgaagatagagttttgattgatttaccattatgtgggaggaagtttacttggtttaagggggatgga |
2366903 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagag |
298 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
2366902 |
cgctcgatgagtagattggataggttcttgctctctgaagaatggtgtttggtgtggcctaactgcattcaggtggcacacttaagag |
2366815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 359
Target Start/End: Original strand, 10620147 - 10620258
Alignment:
| Q |
248 |
aagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattg |
347 |
Q |
| |
|
|||| ||||||||| |||||||||||||| | || | || || || |||||||||| ||||| | |||||| || || ||||||||||| || ||||| |
|
|
| T |
10620147 |
aagagtggtgtttgttgtggcctaattgcttacaaattgcgcagttgagaggattattggatcattatcctttggttttgtctgtggatgaggaaaattg |
10620246 |
T |
|
| Q |
348 |
gggtccgagacc |
359 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10620247 |
gggtccgagacc |
10620258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 21738319 - 21738454
Alignment:
| Q |
167 |
taccgttatgtgggagaaagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtg |
266 |
Q |
| |
|
||||||||||||| |||| |||||||||| || |||||||| | ||||||||| |||| || |||| ||| | || || |||||| ||||| ||| |
|
|
| T |
21738319 |
taccgttatgtggccgaaaatttacttggttcaaaggggatggtaggtcgatgagtcggttagaccggtttttgatttcggaggaatggggtttgaggtg |
21738418 |
T |
|
| Q |
267 |
gcctaattgcattcaggtggcacaattaagaggatt |
302 |
Q |
| |
|
|||||||| |||||||||| || ||||||||||| |
|
|
| T |
21738419 |
gcctaattttcttcaggtggctcagttaagaggatt |
21738454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 47421697 - 47421295
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
47421697 |
cgaggttgctttctttagggaataacaaggtttgtgtttgtggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagaggttctcagtt |
47421598 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
47421597 |
ggtggatgattgtgcaccctttcatgattttattgaagatagggttttgattgatttacctttatgtgggaggaagtttacttggtttaagggggatggt |
47421498 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatc |
310 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||| || ||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
47421497 |
cgttcgatgagtagattggacaggttcttgctttctgaagaatggtgtatggtgtggccgaactgcattcaggtggcacatttacgaggtttatctgatc |
47421398 |
T |
|
| Q |
311 |
actgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttattttgattttgt |
410 |
Q |
| |
|
|||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| | ||||||||| ||| ||||||||| |
|
|
| T |
47421397 |
actgtcctatagttttgtctgtggatgaagagaattggggtccgagaccggtgcgtctgttgaagtgttggcacgatatgcctggctatgatgattttgt |
47421298 |
T |
|
| Q |
411 |
tcg |
413 |
Q |
| |
|
||| |
|
|
| T |
47421297 |
tcg |
47421295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 45716714 - 45716483
Alignment:
| Q |
11 |
cgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggttctcaggt |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||| | |
|
|
| T |
45716714 |
cgaggttgctttctttagggaataacaaggtttgtgtttgcggggatttcaacactgtgcggtcagtcgaagaaaggcgttcggttagaggttctcagtt |
45716615 |
T |
|
| Q |
111 |
ggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagggggatgga |
210 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
45716614 |
ggtggatgattgtgcaccttttaatgattttattgaagatagagttttgattgatttacctttatgtgggaggaagtttacttggtttaagggggatgga |
45716515 |
T |
|
| Q |
211 |
cgttcgatgagtaggttggataggttcttgct |
242 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||| |
|
|
| T |
45716514 |
cgctcgatgagtagattggataggttcttgct |
45716483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 413
Target Start/End: Complemental strand, 23241282 - 23240872
Alignment:
| Q |
3 |
actttcatcgaggttgctttctttagggaataaaaaggtttgtgtttgcggggattttaacacggtgcggtctgtcgaagaaaggcgttcggttaggggt |
102 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||| |||||||||||||| || ||||||||||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
23241282 |
actttcgtcgaggttgctttctttatgtaataataaggtttgtgtttgtggagattttaacactgtgcggtcagttgaagaaaggcgttcggttaggggt |
23241183 |
T |
|
| Q |
103 |
tctcaggtggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaagtttacttggtataagg |
202 |
Q |
| |
|
|| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||| ||||||||||||| ||||| |
|
|
| T |
23241182 |
tcccaggtggtagatgattgcacaccttttaatgattttattgaagatcgagttttgattgatttactgttaagtgggaggaagtttacttggtttaagg |
23241083 |
T |
|
| Q |
203 |
gggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggatt |
302 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
23241082 |
gggatggtcgctcgatgaggaggttggataggttcttgctttctgtagaatggtgtatggtgtggcctaattgcattcaggtagctcagttaagaggatt |
23240983 |
T |
|
| Q |
303 |
atctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtatgcctggttatttt |
402 |
Q |
| |
|
||||||||| ||||| | |||| ||||||||||||||||||||||| ||||||||| ||||||| |||| || ||||||| |||||| |||||| || |
|
|
| T |
23240982 |
atctgatcattgtcccattttgttgtctgtggatgaagagaattgggggccgagaccggtgcgtcttctgaaatgttggcaagatatgccaggttatatt |
23240883 |
T |
|
| Q |
403 |
gattttgttcg |
413 |
Q |
| |
|
|||||| |||| |
|
|
| T |
23240882 |
gattttattcg |
23240872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 284
Target Start/End: Complemental strand, 33172476 - 33172278
Alignment:
| Q |
86 |
ggcgttcggttaggggttctcaggtggctgatgattgtgcaccttttaatgattttattgaagatagagttttgattgacctaccgttatgtgggagaaa |
185 |
Q |
| |
|
||||||||||| | || |||||||| || ||||||| |||||| ||||||||||||||||| || | ||||| |||| |||| | |||| |||| |
|
|
| T |
33172476 |
ggcgttcggttcgagggtctcaggttgcagatgattatgcaccgtttaatgattttattgatgagtgtgttttagttgatttacctctgggtggtcgaaa |
33172377 |
T |
|
| Q |
186 |
gtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggt |
284 |
Q |
| |
|
||| || ||||| || || ||||| |||||||||||| | ||||| ||||| |||||||||||||| |||||| | | ||||||||||| |||||||| |
|
|
| T |
33172376 |
gttcacgtggtacaaaggagatgggcgttcgatgagtcgtttggacaggtttttgctctctgaagagtggtgtcagttatggcctaattgtattcaggt |
33172278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 173 - 413
Target Start/End: Original strand, 25854848 - 25855088
Alignment:
| Q |
173 |
tatgtgggagaaagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaa |
272 |
Q |
| |
|
|||||||| | || || ||||||| |||||||||||| || | |||||| ||||||||||| |||||| | || |||| |||||| ||||||||||||| |
|
|
| T |
25854848 |
tatgtgggcggaaattcacttggtttaagggggatgggcggttgatgagcaggttggatagattcttgttgtcagaaggttggtgtctggtgtggcctaa |
25854947 |
T |
|
| Q |
273 |
ttgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattg |
372 |
Q |
| |
|
||| || ||||| || || | | || | |||||||| |||| | ||||| || || |||||||| |||||||| ||||| ||| ||||||| || |
|
|
| T |
25854948 |
ttgtatgcaggttgctcatcttcggggtctgtctgatcattgtcaggtcgtgttgtcagtagatgaagaaaattggggaccgaggccgttgcgtcttctg |
25855047 |
T |
|
| Q |
373 |
aagtgctggcaaggtatgcctggttattttgattttgttcg |
413 |
Q |
| |
|
|| || ||||||| |||||||||||| |||||||||||| |
|
|
| T |
25855048 |
aaatgttggcaagacatgcctggttataatgattttgttcg |
25855088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 184 - 413
Target Start/End: Original strand, 17603755 - 17603983
Alignment:
| Q |
184 |
aagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcagg |
283 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||| || | || |||| |||||| || ||||||||||| | || |||| |
|
|
| T |
17603755 |
aagtttacttggtttaagggggatgggcgttcgatgagtaggttggataggtttgtgttgtcagaaggttggtgtctgttgtggcctaatagtatgcagg |
17603854 |
T |
|
| Q |
284 |
tggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggca |
383 |
Q |
| |
|
| || || ||||| | | |||||||| ||||| | ||||| || || |||||||| |||| ||| |||| ||| ||||||| |||| |||||||| |
|
|
| T |
17603855 |
ttgctcatttaagggttctgtctgatcattgtccgattgtgttgtcagtagatgaagaaaattaggg-acgaggccgttgcgtcttctgaaatgctggca |
17603953 |
T |
|
| Q |
384 |
aggtatgcctggttattttgattttgttcg |
413 |
Q |
| |
|
|| |||||||||||| |||||||||||| |
|
|
| T |
17603954 |
agacatgcctggttataatgattttgttcg |
17603983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 413
Target Start/End: Original strand, 17555600 - 17555823
Alignment:
| Q |
190 |
acttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcac |
289 |
Q |
| |
|
||||||| |||||||||||| | |||||||| ||||||||||| |||||| | || |||| |||||| |||||||||||||||| || ||||| || | |
|
|
| T |
17555600 |
acttggtttaagggggatgggtggtcgatgagcaggttggatagattcttgttgtcagaaggttggtgtctggtgtggcctaattgtatgcaggttgctc |
17555699 |
T |
|
| Q |
290 |
aattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaaggtat |
389 |
Q |
| |
|
| || | || | |||||||| ||||| | ||||| || || |||||||| |||||||| ||||| ||| ||||||| |||| || ||||||| || |
|
|
| T |
17555700 |
atctacggggtctgtctgatcattgtccggttgtgttgtcagtagatgaagaaaattggggaccgaggccgttgcgtcttctgaaatgttggcaagacat |
17555799 |
T |
|
| Q |
390 |
gcctggttattttgattttgttcg |
413 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
17555800 |
gcctggttataatgattttgttcg |
17555823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 18680081 - 18680151
Alignment:
| Q |
205 |
gatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattg |
275 |
Q |
| |
|
||||| ||||| ||||||||| |||| ||||| ||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
18680081 |
gatgggcgttcaatgagtaggctggacaggtttttgctctcttaagaatggtgtttgttatggcctaattg |
18680151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 214 - 350
Target Start/End: Original strand, 9666456 - 9666592
Alignment:
| Q |
214 |
tcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcact |
313 |
Q |
| |
|
||||||||| | ||||| |||| ||| ||||||| |||||| ||||| |||||||||||||||||||||||| || |||||||| || || ||||| | |
|
|
| T |
9666456 |
tcgatgagtcgtttggaccggtttttgatctctgaggaatggggtttgaagtggcctaattgcattcaggtggctcagttaagaggtttgtcggatcatt |
9666555 |
T |
|
| Q |
314 |
gtcctttagtgttatctgtggatgaagagaattgggg |
350 |
Q |
| |
|
|||| || ||| | ||||||||||| || |||||||| |
|
|
| T |
9666556 |
gtccgttggtgctgtctgtggatgaggaaaattgggg |
9666592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 354
Target Start/End: Original strand, 28398030 - 28398140
Alignment:
| Q |
244 |
tctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagaga |
343 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||| ||||| || || || || |||| |||||||| ||||||||||| | | || ||||||||||| | |
|
|
| T |
28398030 |
tctgaagactggtgcttagtgtggccaaattgtattcaagtcgctcatttgcgaggtttatctgaccactgtcctttgattctgtcggtggatgaagaaa |
28398129 |
T |
|
| Q |
344 |
attggggtccg |
354 |
Q |
| |
|
||||||||||| |
|
|
| T |
28398130 |
attggggtccg |
28398140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 350
Target Start/End: Complemental strand, 39432976 - 39432840
Alignment:
| Q |
214 |
tcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcact |
313 |
Q |
| |
|
||||||||| | ||||| |||| ||| ||||||| |||| | ||||| |||||||||||||||||||||||| || |||||||| || || ||||| | |
|
|
| T |
39432976 |
tcgatgagtcgtttggaccggtttttgatctctgaggaatagggtttgaagtggcctaattgcattcaggtggctcagttaagaggtttgtcggatcatt |
39432877 |
T |
|
| Q |
314 |
gtcctttagtgttatctgtggatgaagagaattgggg |
350 |
Q |
| |
|
|||| || ||| | ||||||||||| || |||||||| |
|
|
| T |
39432876 |
gtccgttggtgctgtctgtggatgaggaaaattgggg |
39432840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 242 - 350
Target Start/End: Complemental strand, 20798294 - 20798186
Alignment:
| Q |
242 |
tctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaaga |
341 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||||||||||| || |||||||| || || ||||| ||||| || ||| | ||| ||||||| || |
|
|
| T |
20798294 |
tctctgaggaatggggtttgaagtggcctaattgcattcaggtggctcagttaagaggtttgtcggatcattgtccgttggtgctgtctttggatgagga |
20798195 |
T |
|
| Q |
342 |
gaattgggg |
350 |
Q |
| |
|
|||||||| |
|
|
| T |
20798194 |
aaattgggg |
20798186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 385
Target Start/End: Complemental strand, 9137930 - 9137751
Alignment:
| Q |
206 |
atggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatc |
305 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||| |||| || | |||||||||| || ||||||| ||||| |||||| || || ||||| || ||||| |
|
|
| T |
9137930 |
atggtcgttcgatgagtagattggacaggtttctgctttcaggagaatggtgtctgttgtggccaaattgtgttcaggctgctcatttaaggggtttatc |
9137831 |
T |
|
| Q |
306 |
tgatcactgtcctttagtgttatctgtggatgaagagaattggggtccgagaccgctgcgtctattgaagtgctggcaag |
385 |
Q |
| |
|
|||||| |||||| | | ||| ||||| ||| | ||||||||||| ||| | || ||||||| ||||| || ||||||| |
|
|
| T |
9137830 |
tgatcattgtcctatcgagttgtctgttgataatgagaattgggggccgcgtcctgtgcgtctcttgaaatgttggcaag |
9137751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 21412909 - 21412851
Alignment:
| Q |
253 |
tggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatca |
311 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
21412909 |
tggtgcttggtgtggccgaattgtattcaggtggcacaattgagaggattatatgatca |
21412851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 22189271 - 22189377
Alignment:
| Q |
253 |
tggtgtttggtgtggcctaattgcattcaggtggcacaattaagaggattatctgatcactgtcctttagtgttatctgtggatgaagagaattggggtc |
352 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||||||| ||||| || | || || || ||||| || |||||||||| |
|
|
| T |
22189271 |
tggtgcttggtgtggccgaattgtattcaggtggctcaattgcgaggattatctgatcattgtcccttgcttttgtcagttgatgaggaaaattggggtc |
22189370 |
T |
|
| Q |
353 |
cgagacc |
359 |
Q |
| |
|
| ||||| |
|
|
| T |
22189371 |
caagacc |
22189377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 47620478 - 47620586
Alignment:
| Q |
167 |
taccgttatgtgggagaaagtttacttggtataagggggatggacgttcgatgagtaggttggataggttcttgctctctgaagaatggtgtttggtgtg |
266 |
Q |
| |
|
||||||| ||||| | ||||| ||||||| |||||| |||| |||||||||||||| ||||| | || ||||| || | |||||||||| || |||| |
|
|
| T |
47620478 |
taccgttgtgtggtcggaagttcacttggttcaaggggaatggtcgttcgatgagtagattggacaaatttttgctttcgggagaatggtgtctgttgtg |
47620577 |
T |
|
| Q |
267 |
gcctaattg |
275 |
Q |
| |
|
||| ||||| |
|
|
| T |
47620578 |
gccaaattg |
47620586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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