View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_441 (Length: 230)
Name: NF10855A_low_441
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_441 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 46238872 - 46239101
Alignment:
| Q |
1 |
gggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgtag |
100 |
Q |
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| T |
46238872 |
gggaagaaaccatattctacagaggtggggttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtttgtag |
46238971 |
T |
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| Q |
101 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagatt |
200 |
Q |
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| T |
46238972 |
ctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagatt |
46239071 |
T |
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| Q |
201 |
gccatctatgctgtgggtgaaggaattgat |
230 |
Q |
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| T |
46239072 |
gccatctatgctgtgggtgaaggaattgat |
46239101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3455786 - 3455556
Alignment:
| Q |
1 |
gggaagaaaccatattctacagaggtgggg-ttcaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgta |
99 |
Q |
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||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455786 |
gggaagaaaccgtattctacagaggtgggggttaaaacccttgtgtctgacttagttccagatgcttggaaagtaggtgttattaggcaacttgtgtgta |
3455687 |
T |
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| Q |
100 |
gctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagat |
199 |
Q |
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| T |
3455686 |
gctggggttatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgagat |
3455587 |
T |
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| Q |
200 |
tgccatctatgctgtgggtgaaggaattgat |
230 |
Q |
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| T |
3455586 |
tgccatctatgctgtgggtgaaggaattgat |
3455556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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