View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_442 (Length: 230)
Name: NF10855A_low_442
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_442 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 20900682 - 20900905
Alignment:
| Q |
1 |
taagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaattttattatgtta |
100 |
Q |
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| T |
20900682 |
taagttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaaatttattatgtta |
20900781 |
T |
|
| Q |
101 |
agtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaaa |
200 |
Q |
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| T |
20900782 |
agtgtttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttttagaacatatatgctgattaaa |
20900881 |
T |
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| Q |
201 |
ataagatttgcttcttgtcatatg |
224 |
Q |
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|||||||||| ||||||||||||| |
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| T |
20900882 |
ataagatttgtttcttgtcatatg |
20900905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 13950240 - 13950458
Alignment:
| Q |
5 |
ttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaattttattatgttaagtg |
104 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||| || | |||| |
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| T |
13950240 |
ttcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctgatcagtg |
13950339 |
T |
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| Q |
105 |
tttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaaaataa |
204 |
Q |
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| T |
13950340 |
attaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaaaatat |
13950438 |
T |
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| Q |
205 |
gatttgcttcttgtcatatg |
224 |
Q |
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| T |
13950439 |
gatttgcttcttgtcatatg |
13950458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 2380 - 2598
Alignment:
| Q |
5 |
ttcatctgtcatcatctttgcatgtccttaggtgatgtttttaaagtagatgtggacacaagaagcatattatttatttcgaattttattatgttaagtg |
104 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |||||| || | |||| |
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| T |
2380 |
ttcatctgtcatcatcttcgcatgtccttaggtgatgtttttaaagtaaatgtgaacacaagaagcatattatttatttggaaatttattctgatcagtg |
2479 |
T |
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| Q |
105 |
tttaattaatacaatgttaaatatagtctactgttacccaatttacttgtctaagaaaattggacaaacatttatagaacatatatgctgattaaaataa |
204 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||| |
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| T |
2480 |
attaattaatacaatgttaaatatagtctactgtta-ccaatttacttgtctaagaaaattggacaaacatttatcgaaaatggatgctgattaaaatat |
2578 |
T |
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| Q |
205 |
gatttgcttcttgtcatatg |
224 |
Q |
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|||||||||||||||||||| |
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| T |
2579 |
gatttgcttcttgtcatatg |
2598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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