View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_458 (Length: 229)
Name: NF10855A_low_458
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_458 |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17451379 - 17451607
Alignment:
| Q |
1 |
ataaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
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| T |
17451379 |
ataaaggttatcgatgttgggatcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattt |
17451478 |
T |
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| Q |
101 |
tgtttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17451479 |
tgtttcaattccgtccacttccactcctttatttactaaccctgatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcc |
17451578 |
T |
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| Q |
201 |
ccttccgatgttccatccacttcaaatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17451579 |
ccttccgatgttccatccacttcaaatga |
17451607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 3 - 182
Target Start/End: Complemental strand, 5241712 - 5241533
Alignment:
| Q |
3 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
102 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| ||| || ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
5241712 |
aaaggttatcgatgttgggatccaatatcgcaacgcattcgcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
5241613 |
T |
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| Q |
103 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttct |
182 |
Q |
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| T |
5241612 |
agtcaatcccgtctacttccactcctctctttactaaccctgatgttgacctttttcctagtgacacgcatgcaggttct |
5241533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 14826104 - 14826198
Alignment:
| Q |
3 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaa |
97 |
Q |
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||||||| ||||||||||| || || || ||| ||||||| | || |||||||||||| |||||||||| | |||||||||||| |||||||| |
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| T |
14826104 |
aaaggtttccgatgttgggaccctatatcccaatgcattcgtatttctcgtcatgttgtcttttgggaacacataatgttctcttctttgtcaaa |
14826198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24432330 - 24432558
Alignment:
| Q |
1 |
ataaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
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| T |
24432330 |
ataaaggttatcgatgttgggatcccatttctcaacgcattcgcacctcccgtcatgttgtcttttgggaacataaaatgttctcttccttgtcaaattt |
24432429 |
T |
|
| Q |
101 |
tgtttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24432430 |
tgtttcaattccgtccacttccactcctttatttactaaccctgatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcc |
24432529 |
T |
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| Q |
201 |
ccttccgatgttccatccacttcaaatga |
229 |
Q |
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| T |
24432530 |
ccttccgatgttccatccacttcaaatga |
24432558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 29991189 - 29991409
Alignment:
| Q |
3 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
102 |
Q |
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|||||||||||||||||||||||||| || || |||||||||||||| ||||||||| || |||| ||||| | ||||||||||||||| ||||| ||| |
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| T |
29991189 |
aaaggttatcgatgttgggatccaatatcccagcgcattcgcacctctcgtcatgttatcttttgcgaacatataatgttctcttccttatcaaagttta |
29991288 |
T |
|
| Q |
103 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttcttctagtgagctctcttcccc |
202 |
Q |
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|| || | || |||||||||||||| ||||| |||| |||||||| |||| |||| ||||| ||||||||| |||||||||||| | |||| |
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| T |
29991289 |
actcgatcctttctacttccactcctttctttacgaacctcgatgttgacctttttcctagtaacacacatgcaggtttttctagtgagcttccaacccc |
29991388 |
T |
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| Q |
203 |
ttccgatgttccatccacttc |
223 |
Q |
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||||||||||| ||||||||| |
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| T |
29991389 |
ttccgatgttcaatccacttc |
29991409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 3 - 143
Target Start/End: Original strand, 16503228 - 16503368
Alignment:
| Q |
3 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
102 |
Q |
| |
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|||||| ||||||||||||| || || |||||||||||||| ||| | ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
16503228 |
aaaggtcatcgatgttgggacccgatatctcaacgcattcgtgtctctcaacatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
16503327 |
T |
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| Q |
103 |
tttcaattccgtccacttccactcctttatttactaaccct |
143 |
Q |
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||||||||||| ||||| |||||| | |||||||||||| |
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| T |
16503328 |
agtcaattccgtctacttcgactcctctctttactaaccct |
16503368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 53016985 - 53016806
Alignment:
| Q |
3 |
aaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttg |
102 |
Q |
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||||| |||||||||| ||||||||| || ||||||||| ||| ||| || ||||||||| |||||||||| | ||||||||||||||||||||| ||| |
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| T |
53016985 |
aaaggctatcgatgttaggatccaatatcccaacgcatt-gcatctctcgccatgttgtcttttgggaacatataatgttctcttccttgtcaaagttta |
53016887 |
T |
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| Q |
103 |
tttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttctt |
183 |
Q |
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||||| ||||| |||||||||||| | |||||||||||| |||||||| |||| |||||||||| |||||||||||| |
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| T |
53016886 |
agtcaatcccgtctacttccactcctctctttactaaccctgatgttgacctttttcctagtgacacacatgcaggttctt |
53016806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 20669917 - 20669736
Alignment:
| Q |
1 |
ataaaggttatcgatgttgggatccaatttctcaacgcattcgcacctcccgtcatgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatt |
100 |
Q |
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|
|||||||||||| ||||| ||||||||| ||||| |||||||||| ||| |||||||||||| |||||||||| | ||||||||||||||| ||||| || |
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| T |
20669917 |
ataaaggttatcaatgttaggatccaatatctcagcgcattcgcatctctcgtcatgttgtcttttgggaacatataatgttctcttccttatcaaagtt |
20669818 |
T |
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| Q |
101 |
tgtttcaattccgtccacttccactcctttatttactaaccctaatgttgactattttaatagtgacacatatgcaggttct |
182 |
Q |
| |
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| ||||| ||||| || | |||||| | |||||||||||| |||| || | |||| |||||||| | ||||||||||| |
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| T |
20669817 |
taagtcaatcccgtctacctatactcctctctttactaaccctgatgtcgatttttttcctagtgacaaacatgcaggttct |
20669736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 12546378 - 12546504
Alignment:
| Q |
54 |
catgttgtcatttgggaacaaaaaatgttctcttccttgtcaaaatttgtttcaattccgtccacttccactcctttatttactaaccctaatgttgact |
153 |
Q |
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||||||||| ||||| |||| | |||||| |||||||||||||| ||| |||||||| || |||||||||||| | ||||||||||| |||| | || |
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| T |
12546378 |
catgttgtcttttggaaacatataatgttttcttccttgtcaaagtttaagtcaattccctcaacttccactcctctttttactaaccccgatgtcggct |
12546477 |
T |
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| Q |
154 |
attttaatagtgacacatatgcaggtt |
180 |
Q |
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||||| ||||||||| |||||||||| |
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| T |
12546478 |
attttcctagtgacacgtatgcaggtt |
12546504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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