View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_462 (Length: 229)

Name: NF10855A_low_462
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_462
NF10855A_low_462
[»] chr4 (23 HSPs)
chr4 (19-211)||(6614319-6614511)
chr4 (19-208)||(18116667-18116857)
chr4 (19-208)||(36279488-36279677)
chr4 (19-204)||(23158435-23158620)
chr4 (19-208)||(15649352-15649541)
chr4 (19-208)||(51872433-51872622)
chr4 (19-204)||(17838819-17839004)
chr4 (19-204)||(22340331-22340516)
chr4 (19-204)||(29123724-29123908)
chr4 (24-199)||(15705850-15706025)
chr4 (19-199)||(4303487-4303667)
chr4 (19-199)||(8110675-8110855)
chr4 (70-209)||(12915538-12915677)
chr4 (24-208)||(29192605-29192789)
chr4 (24-199)||(50694044-50694219)
chr4 (24-217)||(34994465-34994658)
chr4 (148-208)||(4723310-4723370)
chr4 (61-204)||(12290544-12290687)
chr4 (24-199)||(36950958-36951133)
chr4 (102-204)||(3621321-3621423)
chr4 (19-209)||(24059390-24059580)
chr4 (102-209)||(17469492-17469599)
chr4 (70-118)||(25135116-25135164)
[»] chr2 (11 HSPs)
chr2 (21-208)||(27914888-27915075)
chr2 (19-208)||(23384591-23384780)
chr2 (19-208)||(21963156-21963345)
chr2 (19-208)||(32349622-32349811)
chr2 (19-204)||(38938224-38938409)
chr2 (19-143)||(30275703-30275826)
chr2 (24-208)||(22298660-22298844)
chr2 (24-208)||(33937067-33937249)
chr2 (153-208)||(30274477-30274532)
chr2 (19-109)||(20007345-20007435)
chr2 (24-208)||(1258208-1258393)
[»] chr5 (10 HSPs)
chr5 (25-208)||(10462428-10462611)
chr5 (19-208)||(5825254-5825443)
chr5 (19-208)||(6678861-6679050)
chr5 (19-199)||(11265782-11265962)
chr5 (19-204)||(27891450-27891635)
chr5 (24-217)||(38931508-38931701)
chr5 (19-208)||(31962957-31963146)
chr5 (19-204)||(29150057-29150242)
chr5 (24-211)||(8895129-8895316)
chr5 (150-199)||(29322550-29322599)
[»] chr3 (20 HSPs)
chr3 (19-206)||(17154092-17154279)
chr3 (19-204)||(23571906-23572091)
chr3 (19-208)||(53152370-53152559)
chr3 (19-208)||(3514432-3514621)
chr3 (61-208)||(32945639-32945786)
chr3 (19-208)||(9818808-9818997)
chr3 (19-204)||(42462472-42462657)
chr3 (80-208)||(8542253-8542381)
chr3 (19-204)||(48547306-48547491)
chr3 (19-197)||(30737247-30737425)
chr3 (20-204)||(23603015-23603199)
chr3 (84-208)||(9246777-9246901)
chr3 (24-199)||(8595014-8595189)
chr3 (19-204)||(42459577-42459761)
chr3 (24-217)||(10753802-10753995)
chr3 (161-208)||(44879743-44879790)
chr3 (150-208)||(39633248-39633306)
chr3 (24-209)||(16663723-16663908)
chr3 (24-209)||(52196034-52196219)
chr3 (69-109)||(28393365-28393405)
[»] chr7 (22 HSPs)
chr7 (19-208)||(9403410-9403599)
chr7 (19-208)||(37075875-37076064)
chr7 (19-208)||(40892049-40892238)
chr7 (19-208)||(34981595-34981784)
chr7 (19-208)||(12121334-12121523)
chr7 (19-202)||(586538-586721)
chr7 (19-208)||(24819445-24819634)
chr7 (58-208)||(21607986-21608136)
chr7 (19-208)||(36575667-36575856)
chr7 (106-217)||(3483065-3483176)
chr7 (61-208)||(31252966-31253113)
chr7 (19-204)||(27278354-27278539)
chr7 (18-199)||(20705776-20705957)
chr7 (18-199)||(20873820-20874001)
chr7 (19-95)||(18815678-18815754)
chr7 (19-95)||(27990236-27990312)
chr7 (19-109)||(8457469-8457559)
chr7 (156-209)||(18815815-18815868)
chr7 (24-217)||(45649451-45649644)
chr7 (150-209)||(22866164-22866223)
chr7 (102-217)||(47553028-47553143)
chr7 (150-208)||(27868658-27868716)
[»] chr1 (12 HSPs)
chr1 (19-208)||(41343093-41343282)
chr1 (19-208)||(27029700-27029889)
chr1 (19-208)||(10003679-10003868)
chr1 (19-204)||(5557019-5557204)
chr1 (61-208)||(44753748-44753895)
chr1 (93-208)||(48759777-48759892)
chr1 (21-209)||(49369514-49369702)
chr1 (19-204)||(45757435-45757620)
chr1 (70-197)||(37666112-37666239)
chr1 (19-208)||(40392461-40392642)
chr1 (19-94)||(26995826-26995901)
chr1 (156-209)||(26995712-26995765)
[»] scaffold0041 (1 HSPs)
scaffold0041 (19-208)||(74046-74235)
[»] chr8 (6 HSPs)
chr8 (19-208)||(26078011-26078200)
chr8 (19-208)||(2959875-2960064)
chr8 (19-204)||(31423500-31423685)
chr8 (21-199)||(26390528-26390706)
chr8 (19-204)||(29529926-29530110)
chr8 (72-130)||(18182108-18182166)
[»] chr6 (9 HSPs)
chr6 (19-208)||(18295681-18295870)
chr6 (19-204)||(667016-667200)
chr6 (18-202)||(2893991-2894175)
chr6 (18-204)||(28605171-28605357)
chr6 (70-209)||(17227675-17227814)
chr6 (70-204)||(14223505-14223639)
chr6 (24-217)||(5391807-5392000)
chr6 (70-204)||(7218686-7218820)
chr6 (24-208)||(9759793-9759977)
[»] scaffold0032 (1 HSPs)
scaffold0032 (19-204)||(58681-58866)
[»] scaffold0003 (1 HSPs)
scaffold0003 (70-204)||(225060-225194)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 6614319 - 6614511
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6614319 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacat 6614418  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatttt 211  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6614419 gaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatttt 6614511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 18116667 - 18116857
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18116667 atcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaatag 18116766  T
Q  119 gaggattttcc-aaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18116767 gaggattttccaaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 18116857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 36279488 - 36279677
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36279488 atcagttttgcgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatatactatatggaaagatcgcaacag 36279587  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  36279588 gaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 36279677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 23158435 - 23158620
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  23158435 atcagttttgcgctcttggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacag 23158534  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||    
T  23158535 gaggattttccaaaaccaaattgttcttttggaagttctacttgaaagagtcaaatttcaaacgttttggtggttgaaagctaact 23158620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 15649352 - 15649541
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||||||| ||||||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  15649352 atcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacag 15649451  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15649452 gaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 15649541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 51872622 - 51872433
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||| ||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| |||||| |||||| ||||||||||    
T  51872622 atcagttttgtggtctaggaggtttctcaaagaattctatgaaagcttttactattatttggatatcggccttatatactatttggaaaaatcgcaacag 51872523  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  51872522 gaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 51872433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 17838819 - 17839004
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||||||||| || || |||||||||||  ||||||| || |||||||||||||||| ||| ||||||  ||| ||||||||||||||||     
T  17838819 atcagttttgtgctcttgggggcttttcaaagaattccatgaaagctttgtctattatttggattttggttttatttgttatttggaaagatcgcaacat 17838918  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    || ||||||||||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||    
T  17838919 gaagattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggatgaaagcaaact 17839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 22340516 - 22340331
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||| ||| ||||||  ||||||||||||||||||       
T  22340516 atcagttttgtgctcttggaggtttttcaaagaattctatgaaagctttgtctattatttggattttggttttatttgttatatggaaagatcgcaattt 22340417  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    || ||||||||||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||    
T  22340416 gaagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 22340331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 29123724 - 29123908
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||| ||||||  ||| ||||||||||||||       
T  29123724 atcagttttgtgctcttggaggttt-tcaaagaattctatgaaagctttgtctattatttggatttcggttttatttgttatttggaaagatcgcaattt 29123822  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||    
T  29123823 gaggattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaactttttggtggatgaaagcaaact 29123908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 15705850 - 15706025
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||| ||||||| ||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||| ||| |||||||||||||| | || ||    
T  15705850 ttttgtgcccttggagatttttcaaagagttctacgaaagctttatctattgtttggatttcggttttatttattatttggaaagatcgcaatatgaaga 15705949  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    ||||||||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||||||    
T  15705950 ttttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagc 15706025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 4303487 - 4303667
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||| |||||||| ||||||||||| ||||||| ||||  |||||| || |||||| ||||||||||| | ||||||  ||| |||||||||||||| |     
T  4303487 atcaattttgtgcccttggaggtttttcaaagagttctacgaaagctttgtctattgtttggatttcgattttatttgttatttggaaagatcgcaatat 4303586  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    || ||||||||||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| |||||||    
T  4303587 gaagattttccaaaaccatatgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagc 4303667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 8110855 - 8110675
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||| |||||||||||||||  || ||| ||| ||||||| ||||||||||||||||||  ||| ||||| || ||||||||    
T  8110855 atcagttttgtgctcttggagggttctcaaagaattctaggacagcttttactattatatggatttcggtcttatttgttatttggaaggaccgcaacag 8110756  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    ||||||||| || |||||| |||  ||| | |||| |||| |||||||||| ||||| || || | ||||||| |||||||    
T  8110755 gaggatttttcagaaccaagttgaacatctcgaagctctttttgaaagggttaaacttcagacttattggtggctgaaagc 8110675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 12915677 - 12915538
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    ||||||||| |||||||||||||| |  |||||||||||||||||||||||| ||||||||||| ||  ||| |||| | |||| |||| | ||||||||    
T  12915677 ctattatttagatttcggtcttatatgttatatggaaagatcgcaacaggagaattttccaaaatcactttgatcatctagaagctcttatggaaagggt 12915578  T
Q  170 caaactccaaacgttttggtggttgaaagctaactacatt 209  Q
     ||||| ||||||| ||||||||||||||| |||| ||||    
T  12915577 taaacttcaaacgtattggtggttgaaagcaaacttcatt 12915538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 29192605 - 29192789
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||| ||||| ||||| || ||| ||| ||  ||| ||||||||||||||||||| |||||    || | ||||||| | |||||||| |    
T  29192605 ttttgtgctcttgggggtttttcaaaaaactctatgacaggttttactattatttggatttcggttttattcgtcatttagaaagatagaaacaggagaa 29192704  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||| ||  | ||  ||| | || | |||| ||| ||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  29192705 tttttcagcatcattttgattatcttgaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacat 29192789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 50694044 - 50694219
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || | |  || |   ||| |  |||||||||||||||| |||||    || ||||||||| | |||||||| |    
T  50694044 ttttgtgctcttggaggtttctcaaaaaagtgtaggacatgttttacagttatttggatttcggttttattcgtcatttggaaagatagaaacaggagaa 50694143  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    |||| || || ||  ||| |||| | |||||||||||||||||||| ||||| ||||||||||||||| |||||||    
T  50694144 tttttcagaatcactttgatcatcttgaagttcttcttgaaagggttaaacttcaaacgttttggtggctgaaagc 50694219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 34994658 - 34994465
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || |||||    || ||||||||| | |||||||| |    
T  34994658 ttttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttattcgtcatttggaaagatagaaacaggagaa 34994559  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttcttcga 217  Q
    |||| || || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || |||||||| |||||    
T  34994558 tttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattttgttcga 34994465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 4723310 - 4723370
Alignment:
Q  148 tggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||| |||||||||||    
T  4723310 tggaagttcttattaaaagggtcaaacttcaaacgttttggtggttgaaggctaactacat 4723370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 204
Target Start/End: Complemental strand, 12290687 - 12290544
Alignment:
Q  61 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttct 160  Q
    |||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| || || |||||||| || ||||||| ||  ||| | |||| ||||      
T  12290687 aagcttttactattatttggatttcggtcttatttgttatttggaaagatcgaaatagaaggatttttcagaaccaaagtgaacatctcgaagctctttc 12290588  T
Q  161 tgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
     |||||||| ||||| || || | ||||||||||||||| ||||    
T  12290587 ggaaagggttaaacttcagacttattggtggttgaaagcaaact 12290544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 36951133 - 36950958
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || || |||| |  |||| ||||| || || |||||    || ||||||||||| ||||| || |    
T  36951133 ttttgtgctcttggaggtttctcaaaaaaatctaggacaggatttacagttatctggatgtctgttttattcgtcatttggaaagatcgaaacagaagaa 36951034  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    |||| || || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| |||||||    
T  36951033 tttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 36950958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 3621423 - 3621321
Alignment:
Q  102 tggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 201  Q
    ||||||||||| |||||||||||||| || ||||||| ||  ||| | |||| |||| |||||||||| ||||| || || | ||||||||||||||| |    
T  3621423 tggaaagatcgtaacaggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagacttattggtggttgaaagcaa 3621324  T
Q  202 act 204  Q
    |||    
T  3621323 act 3621321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 24059580 - 24059390
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||  |||||| |||| ||||||||||||||   || | |||| |||||||||||||||||||||||||||  ||| || ||||| || ||||     
T  24059580 atcagttttaagctcttagagggttctcaaagaattcaaggacatcattctctattatttggatttcggtcttatttgttatctgaaaagaccgtaacaa 24059481  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
     || |||||  | || ||  ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||    
T  24059480 tagaattttttataatcattttgatcagcttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacatt 24059390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 17469492 - 17469599
Alignment:
Q  102 tggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 201  Q
    ||||||||| | |||||||| ||||| || || ||  ||| |||| | |||| ||||||||||||| | ||||| ||||| ||||||||| ||||||| |    
T  17469492 tggaaagatagaaacaggagaatttttcagaatcactttgatcatcttgaagctcttcttgaaaggattaaacttcaaacattttggtggctgaaagcga 17469591  T
Q  202 actacatt 209  Q
    | ||||||    
T  17469592 attacatt 17469599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 25135164 - 25135116
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||| |||||||||  ||| ||||||||||| |||||    
T  25135164 ctattatttggatttcagtcttatttgttatttggaaagatcgtaacag 25135116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 27914888 - 27915075
Alignment:
Q  21 cagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacagga 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27914888 cagttttgtgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaacagga 27914987  T
Q  121 ggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27914988 ggattttccaaaaccaaattgttcatttgaaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 27915075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 23384780 - 23384591
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23384780 atcagttttgtactcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcacaacag 23384681  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23384680 gaggatttttcaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaatgttttggtggttgaaagctaactacat 23384591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 21963345 - 21963156
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| ||||| |||||||||||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21963345 atcagttttgtgcacttggcggtttctcaaagcattttgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacag 21963246  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21963245 gaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 21963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 32349811 - 32349622
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||  |||||||||||||||||||||||    
T  32349811 atcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatacactatatggaaagatcgcaacag 32349712  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||| | || || |||||||| |||||||| ||||||||||||| |||||||| |||||||||    
T  32349711 gaggattttccaaaaccaaattgttcttttgaaggtgctacttgaaagagtcaaacttcaaacgttttggtagttgaaagttaactacat 32349622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 38938409 - 38938224
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||| |||||||||||| |||| || |||||||||||| ||||||| ||| |||||||||||||||| |||||||||  ||| ||||||||||||||||     
T  38938409 atcatttttgtgctcttagaggcttttcaaagaattctatgaaagcttttactattatttggatttctgtcttatttgttatttggaaagatcgcaacat 38938310  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    || ||||||||||||||| || |  ||| | |||| ||||||||||||||| ||||| ||||| |||||| |||||||||| ||||    
T  38938309 gatgattttccaaaaccatatggaccatcttgaagctcttcttgaaagggttaaacttcaaactttttggcggttgaaagcaaact 38938224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 30275826 - 30275703
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| | ||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  30275826 atcagttttgcgctctag-aggtttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatatactatatgaaaagatcgcaacag 30275728  T
Q  119 gaggattttccaaaaccaaattgtt 143  Q
    ||| |||||||||||||||||||||    
T  30275727 gagaattttccaaaaccaaattgtt 30275703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 22298844 - 22298660
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| || | ||||||||||||||  ||||    ||||| |||||| | |||||||| |    
T  22298844 ttttgtgctcttggaggtttctcaaaaaactctaggacaggctttactgtcatttggatttcggttatattcgtcatatgaaaagattgaaacaggagaa 22298745  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||| ||||| ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||||||| || |||||    
T  22298744 tttttcaaaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagcgaattacat 22298660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 33937067 - 33937249
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||| ||||| ||  ||  || || |||| || |||||||||||||||| |||||    || ||||||||| | |||||||| |    
T  33937067 ttttgtgctcttggaggtttttcaaaaaa--ctacgacaggatttactgttatttggatttcggttttattcgtcatttggaaagatagaaacaggagaa 33937164  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||| || || ||  ||| |||| | |||| ||| ||||||||||| ||||||||||||| ||||||||||||||| || |||||    
T  33937165 tttttcagaatcactttgatcatcttgaagctctccttgaaagggttaaactccaaacgtattggtggttgaaagcgaattacat 33937249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 30274532 - 30274477
Alignment:
Q  153 gttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  30274532 gttctacttgaaagagtcaaacttcaaacattttggtggttgaaagctaactacat 30274477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 20007435 - 20007345
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 109  Q
    |||| ||||||| ||||||||| |||||||| |||||   || | |||| |||||||||||||||||||||||||||  ||| ||||||||    
T  20007435 atcaattttgtgttcttggagggttctcaaaaaattcaaggataacattctctattatttggatttcggtcttatttgttatctggaaaga 20007345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 208
Target Start/End: Complemental strand, 1258393 - 1258208
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||| ||||| || |||  || |  |||| || |||||||||||||||| |||||    || ||||||||| | |||||||| |    
T  1258393 ttttgtgctcttggaggtttttcaaaaaactctaggacaagatttactgttatttggatttcggttttattcttcatttggaaagatagaaacaggagaa 1258294  T
Q  124 ttttc-caaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||  || || ||  ||| |||| | |||| |||  |||||||||| |||||||||| || ||||||||||||||| || |||||    
T  1258293 ttttttcataatcactttgatcatcttgaagctctctttgaaagggttaaactccaaatgtattggtggttgaaagcgaattacat 1258208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 10462428 - 10462611
Alignment:
Q  25 tttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggat 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10462428 tttgtgctcttggaggtttctcaaagaattctgtgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaataggaggat 10462527  T
Q  125 tttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10462528 tttccaaaaccaaattgttcatttggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacat 10462611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 5825254 - 5825443
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| ||||| |||||||||||| ||| | || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5825254 atcagttttgtgcacttggcggtttctcaaagcattatgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgcaacag 5825353  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5825354 gaggatttttcaaaaccaaattgttcatctggaagtccttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 5825443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 6678861 - 6679050
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| ||||||||  |||||||| | ||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6678861 atcagttttgtgcacttggaggagtctcaaagcactctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacag 6678960  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6678961 gaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacat 6679050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 11265962 - 11265782
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  11265962 atcagttttgtgctcttggaggtttctcaaggaagtctatgaaagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaacag 11265863  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    ||||||||| ||  | ||  | | |||| | |||| ||| ||||||||||| ||||| ||||| | |||||||||||||||    
T  11265862 gaggatttttcagcatcatttggatcatcttgaagctctccttgaaagggttaaacttcaaacttattggtggttgaaagc 11265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 27891635 - 27891450
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||| ||||||||||| |||  || | | ||| ||||||| ||||||| ||||||||||  ||| |||||||||||||||||    
T  27891635 atcagttttgtgctcttggagggttctcaaagaagtctaggacatcttttactattatatggatttaggtcttatttgttatttggaaagatcgcaacag 27891536  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||||||||| || ||||||||||  ||| |  ||| |||| |||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  27891535 gaggatttttcagaaccaaattgaacatctcaaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaact 27891450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 38931701 - 38931508
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || ||  ||| |  |||||||||||||||| ||||| |  || ||||||||| | |||||||| |    
T  38931701 ttttgtgctcttggaggtttctcaaaaaactctaggacaggttttacagttatttggatttcggttttattcatcatttggaaagatagaaacaggagaa 38931602  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttcttcga 217  Q
    |||| || || ||  ||| |||| | |||| ||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| |||||    
T  38931601 tttttcagaatcactttgatcatcttgaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagcgaattacattttgttcga 38931508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 31962957 - 31963146
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||| ||||||| ||||||||||||||||||||| |||  || ||  ||| ||||||||| |||||||||  |||||   || |||||||| || |||||    
T  31962957 atcaattttgtggtcttggaggtttctcaaagaactctaggacaggttttactattatttcgatttcggtactatttgtcatttggaaagaccgaaacag 31963056  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||| ||||| ||  | || |||| |||| | |||| ||||||||||||||| ||| ||||||||| ||||||||||||||| || |||||    
T  31963057 gagaatttttcagcatcacattgatcatctagaagctcttcttgaaagggttaaaatccaaacgtattggtggttgaaagcgaattacat 31963146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 29150242 - 29150057
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||| ||  | |||||||||| ||||  || ||| ||| ||||||||||||||| | |||||| |  ||||||||||||||| || ||    
T  29150242 atcagttttgtgctctcggtagcttctcaaagagttctacgatagcgtttactattatttggattttgatcttatatgttatatggaaagatcgaaagag 29150143  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
     |  ||||||||||| ||  ||| |||| | |||| |||| |||||||||| ||||| ||||||| || |||||||||||| ||||    
T  29150142 aaaaattttccaaaatcactttgatcatcttgaagctcttattgaaagggttaaacttcaaacgtattcgtggttgaaagcaaact 29150057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 211
Target Start/End: Complemental strand, 8895316 - 8895129
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| ||||||  || ||  ||| |  ||||||||||||| || |||||    || ||||||||| | |||||||| |    
T  8895316 ttttgtgctcttggaggtttctcaaaaaattctaggacaggttttacagttatttggatttcagttttattcgtcatttggaaagatagaaacaggagaa 8895217  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatttt 211  Q
    |||| || || ||  | | |||| |  ||| ||||||||||||||| ||||| |||||| ||| |||||||||||| || ||||||||    
T  8895216 tttttcagaatcacttagatcatcttaaagctcttcttgaaagggttaaacttcaaacggtttagtggttgaaagcgaattacatttt 8895129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 29322599 - 29322550
Alignment:
Q  150 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| |||||||    
T  29322599 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagc 29322550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 17154092 - 17154279
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  17154092 atcagttttgcgctcttggaggtttctcaaagaattctttgaaagcatttactattatttggatttcagtcttatttactatatggaaagattgcaacag 17154191  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactac 206  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17154192 gaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaactac 17154279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 23571906 - 23572091
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  23571906 atcagttttgtgcttttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtattattttctatatggaaagatcgcaacag 23572005  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||    
T  23572006 gaggattttccaaaaccaaattgttcatttggaagttctaattgaaagggtcaaacttcaaacgttttggtggttgaaagctaact 23572091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 53152370 - 53152559
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||||||| ||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  53152370 atcagttttgtgcacttggaggattctcaaagcattctgtgcaagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacag 53152469  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  53152470 gaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacat 53152559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 3514621 - 3514432
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  3514621 atcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggtcttatatactatttggaaagatcgcaacag 3514522  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  3514521 gaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 3514432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 32945786 - 32945639
Alignment:
Q  61 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttct 160  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  32945786 aagctttttctattatttggatttcggtcttatttactatttggaaagatcgtaacaggaggatttttcaaaaccaaattgttcatctggaagttcttct 32945687  T
Q  161 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  32945686 tgaaagggtcaaactccaaacgttttggtggttgaaagttaactacat 32945639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 9818997 - 9818808
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||| | || |||||||||||||||| | ||||||| ||| |||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  9818997 atcagttttgcgctttaggtggtttctcaaagaattttatgaaagcttttactatcatttggatttcggtcttatatactatatgggaagatcgcaacag 9818898  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| |||||    
T  9818897 gaggatttttcaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacat 9818808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 42462657 - 42462472
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||| || |||||||||| | ||||||  ||| ||||||||||||||||||||||||||  ||| || |||||||||||||     
T  42462657 atcagttttgtgctcttggaggcttttcaaagaattatatgaaaggttttactattatttggatttcggtcttatttgttatttgaaaagatcgcaacat 42462558  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||||| |    |||| | |||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  42462557 gaggattttccaaaaccatacgaatcatcttgaagctcttcttgaaagggttaaacttcaaactttttggtggttgaaagctaact 42462472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 208
Target Start/End: Complemental strand, 8542381 - 8542253
Alignment:
Q  80 gatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaa 179  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||| | |    
T  8542381 gattttggtcttatttactatattgaaagatcgtaacaggaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcga 8542282  T
Q  180 acgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||||||    
T  8542281 acgttttggtggttgaaagctaactacat 8542253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 48547491 - 48547306
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||||||||||||||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| |||||||||||||||||    
T  48547491 atcagttttgtgctcttggaggtttctcaaagaagtctaggacaacttttactattatatggatttcggtcttatttgttatttggaaagatcgcaacag 48547392  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||||||||| || ||||||||||  ||| | |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  48547391 gaggatttttcagaaccaaattgaacatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaact 48547306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 30737425 - 30737247
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||| |||||||||||||||||||||| |||  || | | ||| ||||||| ||||||||||||||||||  |||||| ||||||||||| ||    
T  30737425 atcagttttgtactcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatatgaaaagatcgcaagag 30737326  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaa 197  Q
    ||| ||||||||||| || |||| |||| | |||| ||||||||||||||| ||||| ||||||| |||||||||||||    
T  30737325 gagaattttccaaaatcacattgatcatcttgaagctcttcttgaaagggttaaacttcaaacgtattggtggttgaaa 30737247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 23603199 - 23603015
Alignment:
Q  20 tcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacagg 119  Q
    ||||||||||||||||||||| || |||||||||||| |||||||  | |||||||||||||||||| | ||||||  ||| |||||||||||||||  |    
T  23603199 tcagttttgtgctcttggaggattttcaaagaattctatgaaagctctgtctattatttggatttcgattttatttgttatttggaaagatcgcaacttg 23603100  T
Q  120 aggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    | ||||||||||||| | || | |||| | |||| ||||||||||| ||| ||||| ||||| ||||||||| ||||||| ||||    
T  23603099 aagattttccaaaacaatatggatcatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagcaaact 23603015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 9246901 - 9246777
Alignment:
Q  84 tcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgt 183  Q
    |||||||||| |||||| | |||||||| |||||||||||| ||||||||||||| ||||| |||||| ||||| |||||||| |||||||| ||||| |    
T  9246901 tcggtcttatatactatttagaaagatcacaacaggaggatattccaaaaccaaagtgttcttttggaggttctacttgaaagagtcaaacttcaaacat 9246802  T
Q  184 tttggtggttgaaagctaactacat 208  Q
     |||||||||||||||||| |||||    
T  9246801 attggtggttgaaagctaattacat 9246777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 8595189 - 8595014
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||| |||||| |||| ||||||| ||||  |||||| || |||||| ||||||||||||| ||||||  ||| |||||||||||||| | || ||    
T  8595189 ttttgtgcccttggatgtttttcaaagagttctacgaaagctttgtctattgtttggatttcggttttatttgttatttggaaagatcgcaatatgaaga 8595090  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    ||||||||||||| || | | || | |||| ||||||||||| ||| ||||| ||||| ||||||||| |||||||    
T  8595089 ttttccaaaaccatatgggttatcttgaagctcttcttgaaaaggttaaacttcaaaccttttggtggatgaaagc 8595014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 42459577 - 42459761
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||| || || ||||||| || || | ||  ||| ||| |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  42459577 atcagttttgtgctctcggtggcttctcaaggagttatatgttagcgtttactattatttggatttcggtcttatatgttatatggaaagatcgcaacag 42459676  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||| ||||| ||||| ||  ||| |||| | |||| |||| | | |||||| ||||| ||||||| ||||||||||||||| ||||    
T  42459677 gagaatttt-caaaatcattttgatcatcttgaagctcttatggtaagggttaaacttcaaacgtattggtggttgaaagcaaact 42459761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 217
Target Start/End: Complemental strand, 10753995 - 10753802
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    ||||| |||||||||||||| || || || ||| ||| ||  ||| ||||||||||||||||||| ||||||   |||||||| ||| | ||||| || |    
T  10753995 ttttgcgctcttggaggtttttcgaaaaaatctgtgacaggttttactattatttggatttcggttttatttgtcatatggaaggatagaaacagaagaa 10753896  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttcttcga 217  Q
    |||| ||  | ||| ||| |||  | |||||||||||||||||||| |||||||| |||||||||||||||||||| || ||||| || |||||    
T  10753895 tttttcagcaacaatttgatcagcttgaagttcttcttgaaagggttaaactccagacgttttggtggttgaaagcgaattacatcttgttcga 10753802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 44879790 - 44879743
Alignment:
Q  161 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  44879790 tgaaagggtcaaacttcaaacgttttggtggttgaaaactaactacat 44879743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 39633248 - 39633306
Alignment:
Q  150 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||||||||| || |||||    
T  39633248 gaagctctacttgaaagggttaaactccaaacgttttggtggttgaaagcgaattacat 39633306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 16663908 - 16663723
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| |  |||  || ||  ||| |  |||| |||||||| || |||||    || ||||||||| | ||||| || |    
T  16663908 ttttgtgctcttggaggtttctcaaaaatgtctaggacaggttttacagttatctggatttcagttttattcgtcatttggaaagatagaaacagaagaa 16663809  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
    |||| || || ||| ||| |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || ||||||    
T  16663808 tttttcagaatcaatttgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacatt 16663723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 52196219 - 52196034
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || |||||    || ||||||||| | ||||| || |    
T  52196219 ttttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatctggatttctgttttattcgtcatttggaaagatagaaacagaagaa 52196120  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
    |||| || || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || ||||||    
T  52196119 tttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcaaattacatt 52196034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 28393405 - 28393365
Alignment:
Q  69 tctattatttggatttcggtcttatttactatatggaaaga 109  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  28393405 tctattatttggatttcggtcttatttgttatctggaaaga 28393365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 9403410 - 9403599
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  9403410 atcagttttgtgcacttggaggtttctcaaagcattctttgaaagcattttctattatttggatttcggtcttatttactatttggaaagatcgtaacag 9403509  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9403510 gaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 9403599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 37075875 - 37076064
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||| ||| ||||||||| ||||| || || | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  37075875 atcagttttgtgcacttgaaggattctcaaagcattctgtgcaaactttttctattatttggatttcggtcttatttactatttggaaagatcgtaacag 37075974  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37075975 gaggatttttcaaaaccaaattgttcatctggaagttcttcttgaaagggttaaactccaaacgttttggtggttgaaagctaactacat 37076064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 40892049 - 40892238
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40892049 atcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacag 40892148  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  40892149 gaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacat 40892238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 34981784 - 34981595
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||||||| ||||||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  34981784 atcagttttgtgcacttggaggattctcaaagcattctatgcaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacag 34981685  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34981684 gaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 34981595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 12121523 - 12121334
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| || |||||||||||||||||| ||||||| ||| ||||||||||||| || | ||||| ||||||||||||||||||||||||    
T  12121523 atcagttttgcgctctaggcggtttctcaaagaattctatgaaagcttttactattatttggatctcagccttatatactatatggaaagatcgcaacag 12121424  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  12121423 gaggattttccaaaaccaaattgttcttttggaggttctacttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 12121334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 586721 - 586538
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||| ||||||||||||| | ||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  586721 atcagttttgcgctcttggaggcttctcaaagaattatatgaaagctttcactattatttggatttcggtcttatttactatatggaaagatcgaaaccg 586622  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 202  Q
     ||||| |||||||||||||||| | | ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  586621 aaggatattccaaaaccaaattgattaattggaagttcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaa 586538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 24819634 - 24819445
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||||    
T  24819634 atcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatatggaaagttcgcaacag 24819535  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| |||||    
T  24819534 gaggattttccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacat 24819445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 58 - 208
Target Start/End: Complemental strand, 21608136 - 21607986
Alignment:
Q  58 tgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttct 157  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||   ||||||||||||||||||||||| ||||||||||| |||    
T  21608136 tgaaagcttttactattatttggatttcggtcttatttattatatgaaaagatcgcaaattgaggattttccaaaaccaaattgatcatttggaagctct 21608037  T
Q  158 tcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    | |||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  21608036 ttttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacat 21607986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 36575667 - 36575856
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| ||||||||| |||||||    
T  36575667 atcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagattgcaacag 36575766  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||| ||||||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| |||||    
T  36575767 gaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacat 36575856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 3483065 - 3483176
Alignment:
Q  106 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3483065 aagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttctttttgaaagggtcaaactccaaacgttttggtggttgaaagctaacta 3483164  T
Q  206 cattttcttcga 217  Q
    ||| || |||||    
T  3483165 catattgttcga 3483176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 31253113 - 31252966
Alignment:
Q  61 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttct 160  Q
    |||| ||| |||| ||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||  | || |||||| |||||  |    
T  31253113 aagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacaggaggatattccaaaaccaaagcgctcttttggaggttctatt 31253014  T
Q  161 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||| |||||||| ||||| | |||||||||||||||||| |||||    
T  31253013 tgaaagagtcaaacttcaaacatattggtggttgaaagctaattacat 31252966  T

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Target: chr7; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 27278539 - 27278354
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||| ||||||||||| |||||||   | ||| ||| ||||||| ||| ||| ||||||||||  ||||| |||||||||||||||    
T  27278539 atcagttttgtgctcttgcaggtttctcaaggaattctagaacagcttttactattatatgggttttggtcttatttgttatattgaaagatcgcaacag 27278440  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
     |  |||||| |||| || |||| |||| | |||| ||||||| ||||||| ||| | ||| ||| ||||||||||||||| ||||    
T  27278439 tataattttctaaaatcacattgatcatcttgaagctcttcttaaaagggttaaatttcaatcgtattggtggttgaaagcaaact 27278354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 20705776 - 20705957
Alignment:
Q  18 catcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaaca 117  Q
    |||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || |    
T  20705776 catcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaata 20705875  T
Q  118 ggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    |||||||||| || ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | |||||||||||||||    
T  20705876 ggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagc 20705957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 20873820 - 20874001
Alignment:
Q  18 catcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaaca 117  Q
    |||||||||||||| |||||||| ||||| ||||| |||  |  ||| ||| |||||||||||||||||||||||||   ||| ||||||||||| || |    
T  20873820 catcagttttgtgcacttggagggttctccaagaagtctacgtcagcttttactattatttggatttcggtcttattcgttatttggaaagatcgaaata 20873919  T
Q  118 ggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    |||||||||| || ||||||  ||  ||| | |||| ||||  ||||||||| ||||| |  || | |||||||||||||||    
T  20873920 ggaggatttttcagaaccaacatgaacatctcgaagctctttctgaaagggttaaacttcggacttattggtggttgaaagc 20874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 18815678 - 18815754
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 95  Q
    |||||||||||||||||||||| |||||||| ||||| | || |   || |||||||||||||||||||||||||||    
T  18815678 atcagttttgtgctcttggagggttctcaaaaaattcatggacattcttatctattatttggatttcggtcttattt 18815754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 27990236 - 27990312
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttattt 95  Q
    |||||||||||||||||||||| |||||||| |||||   || | | || |||||||||||||||||||||||||||    
T  27990236 atcagttttgtgctcttggagggttctcaaaaaattcaaggacaaccttctctattatttggatttcggtcttattt 27990312  T

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Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 8457469 - 8457559
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaaga 109  Q
    |||||||||||||||||||||| |||||||| |||||   || ||  || | |||||||||||||||||||||||||  ||| ||||||||    
T  8457469 atcagttttgtgctcttggagggttctcaaaaaattcaaggacagtcttctttattatttggatttcggtcttatttgttatctggaaaga 8457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 18815815 - 18815868
Alignment:
Q  156 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
    |||||||||| ||| ||||||||||| | ||||||||||||||| |||||||||    
T  18815815 cttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacatt 18815868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 45649451 - 45649644
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || || |||| |  ||||||||||||| || |||||    || || |||||| | ||| |||| |    
T  45649451 ttttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatttggatttctgttttattcgtcatttgaaaagatagaaactggagaa 45649550  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttcttcga 217  Q
    |||| || || ||   || |||| | | || ||||||||||||| | ||||| |||| |||||||||| ||||||| || |||||||| |||||    
T  45649551 tttttcagaatcactctgatcatcttggagctcttcttgaaaggattaaacttcaaatgttttggtggctgaaagcgaattacattttgttcga 45649644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 22866164 - 22866223
Alignment:
Q  150 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
    |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || ||||||    
T  22866164 gaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacatt 22866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 47553143 - 47553028
Alignment:
Q  102 tggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagcta 201  Q
    ||||||||| | |||||||| ||||| || || ||  ||| |||| | || | ||| ||||||||| | ||||| ||||||||||||||| ||||||| |    
T  47553143 tggaaagatagaaacaggagaatttttcagaatcattttgatcatcttgacgctctgcttgaaaggattaaacttcaaacgttttggtggctgaaagcga 47553044  T
Q  202 actacattttcttcga 217  Q
    | |||||||| |||||    
T  47553043 attacattttgttcga 47553028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 27868716 - 27868658
Alignment:
Q  150 gaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||| ||||||||||||| | ||| ||||||||| ||||||||||||||| || |||||    
T  27868716 gaagctcttcttgaaaggattaaaatccaaacgtattggtggttgaaagcgaattacat 27868658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 41343093 - 41343282
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41343093 atcagttttgcgctcttggaggcttctcaaagaattctatgaaagcatttactattatttggatttcggtcttatttactatatggaaagatcgcaatag 41343192  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41343193 gaggattttccaaaaccaaattgttcatttggaagttatacttgaaagggtcaaacttcaaacgttttggtggttgaaagctaactacat 41343282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 27029889 - 27029700
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  27029889 atcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacag 27029790  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||| ||||||||||||| || || |||||| ||||| |||||||| |||||||| ||||| | |||||||||||||||||| |||||    
T  27029789 gaggatattccaaaaccaaagtgctcttttggaggttctacttgaaagagtcaaacttcaaacatattggtggttgaaagctaattacat 27029700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 10003868 - 10003679
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||| | || |||||||||||||||||| ||||||| ||| |||| ||||||||||||||||||| |||||| |||||||||||||||||    
T  10003868 atcagttttgcgctttaggtggtttctcaaagaattctatgaaagcttttactatcatttggatttcggtcttatatactatttggaaagatcgcaacag 10003769  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
     ||||| ||||||||||||| || ||  ||||| ||||| |||||||| |||||||| ||||| | ||||||||| |||||||| |||||    
T  10003768 aaggatattccaaaaccaaagtgctctcttggaggttctacttgaaagagtcaaacttcaaacatattggtggtttaaagctaattacat 10003679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 5557204 - 5557019
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||||||||||| ||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||  | | |||||||||||||||||    
T  5557204 atcagttttgtgctcttggagctttctcaaagaattcttggataacttttactattatatggatttcggtcttatttgttgtttggaaagatcgcaacag 5557105  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||||||||| ||| ||||||||| |||| | |||| |||| |||||||||| ||||| ||||| |  |||||||||||||| ||||    
T  5557104 gaggatttttcaataccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttactggtggttgaaagcaaact 5557019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 208
Target Start/End: Original strand, 44753748 - 44753895
Alignment:
Q  61 aagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttct 160  Q
    |||| ||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||  | ||||||  |||| ||    
T  44753748 aagcttttactattatttggatttcggtcttatatactatatggaaagaccgcaacagaaggattttccaaaaccaaagtgcacttttggagtttctact 44753847  T
Q  161 tgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||| |||||||||||||| | |||||||||||||||||| |||||    
T  44753848 tgaaagagtcaaactccaaacatattggtggttgaaagctaattacat 44753895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 48759777 - 48759892
Alignment:
Q  93 tttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggt 192  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||||||||||||    
T  48759777 tttaatatatggaaagatcgcaacaggaagattttccaaaaccaaattgttcttttggaggttttacttgaaagagtcaaacttcaaacgttttggtggt 48759876  T
Q  193 tgaaagctaactacat 208  Q
    ||||||||||||||||    
T  48759877 tgaaagctaactacat 48759892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 49369702 - 49369514
Alignment:
Q  21 cagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacagga 120  Q
    ||||||| ||| ||||||||||| |||||||||| |  |||||| || |||||||||||||||||| | ||||||  ||| ||||||||| |||| | ||    
T  49369702 cagttttatgcccttggaggtttttcaaagaattatacgaaagctttgtctattatttggatttcgattttatttgttatttggaaagattgcaatatga 49369603  T
Q  121 ggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
     |||||||||||||||  | | |||| | |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |||| ||||    
T  49369602 agattttccaaaaccatttgggtcatcttgaagctcttcttgaaagggttaaacttcaaaccttttggtggatgaaagcaaacttcatt 49369514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 45757620 - 45757435
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||  ||||||| |||||||||||||||  || | | ||| ||||||| |||| ||  |||||||||  ||||||||||||| |||||||    
T  45757620 atcagttttgtgcctttggaggcttctcaaagaattctaggacaccttttactattatctggacttttgtcttatttgttatatggaaagattgcaacag 45757521  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||  ||||||||||| || | || |||| |  | | ||||||||||||||| || || ||||| ||||||||||||||||| ||||    
T  45757520 gaaaattttccaaaatcacagtgatcatctaaatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaact 45757435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 197
Target Start/End: Complemental strand, 37666239 - 37666112
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    ||||||||||||||||||| ||||| |  || ||||||||| | |||||||| ||||| ||  | ||| ||| |||| | |||| ||| |||||||||||    
T  37666239 ctattatttggatttcggttttattcatcatttggaaagatagaaacaggagaatttttcagcatcaatttgatcatcttgaagctctacttgaaagggt 37666140  T
Q  170 caaactccaaacgttttggtggttgaaa 197  Q
    |||||||||||| |||||||||||||||    
T  37666139 caaactccaaacattttggtggttgaaa 37666112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 40392642 - 40392461
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||| ||||||||||||||     ||| ||   |||||||||||||||||  |||||||  |||||||||||| || ||||     
T  40392642 atcagttttgtgctcttggagggttctcaaagaattc-----aaggat---ctattatttggatttcgaccttatttgttatatggaaagaccgtaacaa 40392551  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
     || |||||  | |||||| ||| |||  |   ||  |||||||||| ||| ||||||||||| | ||||||||||||||| ||||||||    
T  40392550 tagaatttttgataaccaatttgatcaacttacaggacttcttgaaaaggttaaactccaaacatattggtggttgaaagcgaactacat 40392461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 26995901 - 26995826
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatt 94  Q
    ||||||||||| |||||||||| |||||||| |||||   || | |||| ||| ||||||||||||||||||||||    
T  26995901 atcagttttgtactcttggagggttctcaaaaaattcaaggacaacattctctgttatttggatttcggtcttatt 26995826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 26995765 - 26995712
Alignment:
Q  156 cttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacatt 209  Q
    |||||||| | ||| ||||||||||| | ||||||||||||||| |||||||||    
T  26995765 cttcttgagaaggttaaactccaaacatattggtggttgaaagcgaactacatt 26995712  T

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Target: scaffold0041 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 208
Target Start/End: Complemental strand, 74235 - 74046
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| |||||  |||  ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  74235 atcagttttgcgctctaagagacttctcaaagaattctatgaaagcttttactattatttggatttcggtcttatttactatatggaaagatcgcaacag 74136  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  74135 gaggattttccaaaaccaaattgatcatctggaagctcttcttgaaagggttaaacttcaaacgttttggtggttgaaagctaactacat 74046  T

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Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 26078011 - 26078200
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  26078011 atcagttttgcgctctaggagggttctcaaagaattctatgaaagctttttctattatttggatctcggtcttatatactatttggaaagatcgcaacag 26078110  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||| ||||| ||||||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  26078111 gaggattttccataaccatattgttcttttggatgttcttcttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 26078200  T

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Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 2959875 - 2960064
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||||||| ||||||||| ||||| || || | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  2959875 atcagttttgtgcacttggaggattctcaaagcattctatgtaaactttttctattatttggatttcggtcttattttctatttggaaagatcgtaacag 2959974  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    ||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  2959975 gaggatttttcaaaacgaaattgttcatatggaagttcttcttgaaagggtcaaacttcaaacgttttggtggttgaaagcgaactacat 2960064  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 31423500 - 31423685
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||||||||||||||| |||  || | | ||| ||||||| ||||||||||||||||||  ||| || ||||||||||||||    
T  31423500 atcagttttgtgctcttggaggtttctcaaagaactctaggacaacttttactattatatggatttcggtcttatttgttatttgaaaagatcgcaacag 31423599  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    ||||||||||||||||||||||| |||| | |||| |||| |||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  31423600 gaggattttccaaaaccaaattgatcatctcgaagctctttttgaaagggttaaacttcaaacttattggtggttgaaagcaaact 31423685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 26390528 - 26390706
Alignment:
Q  21 cagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacagga 120  Q
    ||||||||||| || || ||||||||||||||||||  || | | ||| |||||||||||| ||| |||||||||  |||||||||||||||||||||||    
T  26390528 cagttttgtgccctcggtggtttctcaaagaattctaggacaacttttactattatttggacttctgtcttatttgttatatggaaagatcgcaacagga 26390627  T
Q  121 ggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagc 199  Q
    | ||||||||||| || | || |||| | || | ||||||||||||| | || || |||||||||||||||||||||||    
T  26390628 gaattttccaaaatcacagtgatcatctagaggctcttcttgaaaggattaagcttcaaacgttttggtggttgaaagc 26390706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 29530110 - 29529926
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||| |||| |||||||||||||||||||  || | | ||| ||||||| |||| ||| |||||||||  ||||||||||||||| |||||    
T  29530110 atcagttttgtgcccttgtaggtttctcaaagaattctaggacaac-tttcctattatctggacttctgtcttatttgttatatggaaagatcgtaacag 29530012  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
     || ||||||||||| || | || |||| | || | ||||||||||||||| || || ||||| ||||||||||||||||| ||||    
T  29530011 aagaattttccaaaatcacagtgatcatctagatgctcttcttgaaagggttaagcttcaaacattttggtggttgaaagcaaact 29529926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 18182166 - 18182108
Alignment:
Q  72 attatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttcca 130  Q
    |||||||| |||||||| ||||||  ||| ||||||||||| |||| ||||||||||||    
T  18182166 attatttgaatttcggttttatttgttatttggaaagatcgtaacaagaggattttcca 18182108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 18295681 - 18295870
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||| |||| ||||| |||||||||||||||||||||||     
T  18295681 atcagttttgcgctctaggaggtttctcaaagaattctatgaaagcttttactattatttggatctcggccttatatactatatggaaagatcgcaacaa 18295780  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    |||||||||||||||||||||||||| |||||| |||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  18295781 gaggattttccaaaaccaaattgttcttttggaggttctatttgaaagagtcaaacttcaaacgttttggtggttgaaagctaactacat 18295870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 667200 - 667016
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  667200 atcagttttgtgctcttggaggtttctcaaagaattatatgaaagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacag 667101  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||||| || | |||||| |||| |||||||||||| ||  |||| ||||  | ||||||||||||||| ||||    
T  667100 gaggattttccaaaaccatatggatcattttgaagctcttcttgaaagcgt-taacttcaaagatattggtggttgaaagcaaact 667016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 2894175 - 2893991
Alignment:
Q  18 catcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaaca 117  Q
    ||||||||||| ||||| || || ||||||||||||||| || |||| ||| |||| ||||||||||||||||||| ||||||||| ||||| |||||||    
T  2894175 catcagttttgcgctctaggtgggttctcaaagaattctatgcaagcttttactatcatttggatttcggtcttatatactatatgaaaagaccgcaaca 2894076  T
Q  118 ggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaa 202  Q
    |||||||||||||||| |||| || || ||||||  |||| |||||||| |||||||||||||| | |||||| |||||||||||    
T  2894075 ggaggattttccaaaatcaaagtgctcttttggagtttctacttgaaagagtcaaactccaaacatattggtgtttgaaagctaa 2893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 28605171 - 28605357
Alignment:
Q  18 catcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaaca 117  Q
    ||||||||||||||||||||||| ||||| ||||| ||| ||| ||| ||| ||||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  28605171 catcagttttgtgctcttggagggttctccaagaagtctatgacagcttttactattatttggatttcggtcttatttgttatttggaaagatcgtaaca 28605270  T
Q  118 ggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||| || ||||||| ||  ||| | |||| |||| |||||||||| ||||| || |  | |||| |||||||||| ||||    
T  28605271 ggaggatttttcagaaccaaaatgaacatcttgaagctctttttgaaagggttaaacttcagaattattggcggttgaaagcaaact 28605357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 17227814 - 17227675
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    ||||||||||||||||||| ||||||  ||| ||||||||||||||||  || ||||| ||||| || |||| | |  | | || ||||||| |||||||    
T  17227814 ctattatttggatttcggtgttatttgttatttggaaagatcgcaacaaaagaatttttcaaaatcacattgattagcttgcagctcttcttaaaagggt 17227715  T
Q  170 caaactccaaacgttttggtggttgaaagctaactacatt 209  Q
     ||||||||||||| ||||||||||||||| |||| ||||    
T  17227714 taaactccaaacgtattggtggttgaaagcgaacttcatt 17227675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 14223505 - 14223639
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    ||||||||||||||| |||||||| |  ||||||||| |||||||||| ||| ||||||| ||| ||  ||| |||| |||||| |||| | |||| |||    
T  14223505 ctattatttggattttggtcttatatgttatatggaatgatcgcaacaagagaattttccgaaatcactttgatcatctggaagctcttatggaaacggt 14223604  T
Q  170 caaactccaaacgttttggtggttgaaagctaact 204  Q
     ||||| ||||||| ||||||||| ||||| ||||    
T  14223605 taaacttcaaacgtattggtggttaaaagcaaact 14223639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 217
Target Start/End: Original strand, 5391807 - 5392000
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||||||||||||||||||||||| || |||  || || |||| |  |||| |||||||| || |||||    || ||||||||| | |||||||| |    
T  5391807 ttttgtgctcttggaggtttctcaaaaaagtctaggacaggatttacagttatatggatttctgttttattcgtcatttggaaagatagaaacaggagaa 5391906  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacattttcttcga 217  Q
    |||| || || ||   || |||| | |||| ||||||||||||| | ||||| ||||||||||||||| ||||||| || |||||||| |||||    
T  5391907 tttttcagaatcactctgatcatcttgaagctcttcttgaaaggattaaacttcaaacgttttggtggctgaaagcgaattacattttgttcga 5392000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 7218686 - 7218820
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    |||| |||||||||||||| |||| |  |||||||||||||||||| ||||| || || ||||| ||  |||||||| | |||| |||| | |||| |||    
T  7218686 ctatcatttggatttcggttttatatgttatatggaaagatcgcaataggagaatatttcaaaaacaggttgttcatcttgaagctcttttggaaaaggt 7218785  T
Q  170 caaactccaaacgttttggtggttgaaagctaact 204  Q
     ||||| ||| ||| ||||||||||||||| ||||    
T  7218786 taaacttcaagcgtattggtggttgaaagcaaact 7218820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 9759793 - 9759977
Alignment:
Q  24 ttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacaggagga 123  Q
    |||||| |||||||||||||||||||||| |||  ||  |  ||| ||  ||| |||||||||   ||||||  ||| ||||||||||| |||||||| |    
T  9759793 ttttgtcctcttggaggtttctcaaagaactctaggacgggctttactgctatatggatttcgacattatttgttatttggaaagatcgtaacaggagaa 9759892  T
Q  124 ttttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaactacat 208  Q
    | || ||||| ||||||| |||| | || | ||||||||  ||||| ||||| |||| || ||||||||||||||| || |||||    
T  9759893 tatttcaaaatcaaattgatcatcttgatgctcttcttgggagggttaaacttcaaatgtattggtggttgaaagcgaattacat 9759977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 58681 - 58866
Alignment:
Q  19 atcagttttgtgctcttggaggtttctcaaagaattctttgaaagcattttctattatttggatttcggtcttatttactatatggaaagatcgcaacag 118  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||    
T  58681 atcagttttgtgctcttggaggtttctcaaagaacgctatgatagcttttactattatttggatttcggtcttatttgttatatggaaagatcgcaacag 58780  T
Q  119 gaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggtcaaactccaaacgttttggtggttgaaagctaact 204  Q
    |||||||||||||||||| || | |||| | |||| ||||||||||||||| ||||| ||||| | ||||||||||||||| ||||    
T  58781 gaggattttccaaaaccatatggatcatcttgaagctcttcttgaaagggttaaacttcaaacatattggtggttgaaagcaaact 58866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 225060 - 225194
Alignment:
Q  70 ctattatttggatttcggtcttatttactatatggaaagatcgcaacaggaggattttccaaaaccaaattgttcatttggaagttcttcttgaaagggt 169  Q
    |||| |||||||||||||| ||||||  |||||||||||||||||| ||||| || || ||||| ||  |||||||| | |||| |||| | |||| |||    
T  225060 ctatcatttggatttcggttttatttgttatatggaaagatcgcaataggagaatatttcaaaagcaggttgttcatcttgaagctcttttggaaaaggt 225159  T
Q  170 caaactccaaacgttttggtggttgaaagctaact 204  Q
     ||||| ||||||| |||||| |||||||| ||||    
T  225160 taaacttcaaacgtattggtgattgaaagcaaact 225194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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