View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_464 (Length: 229)

Name: NF10855A_low_464
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_464
NF10855A_low_464
[»] chr4 (10 HSPs)
chr4 (1-229)||(8654756-8654984)
chr4 (2-229)||(47541154-47541381)
chr4 (1-229)||(3129665-3129890)
chr4 (45-229)||(7662966-7663150)
chr4 (36-229)||(2631627-2631820)
chr4 (82-229)||(23873240-23873387)
chr4 (82-229)||(55298849-55298996)
chr4 (36-229)||(20675251-20675444)
chr4 (36-229)||(8486699-8486892)
chr4 (164-229)||(49926112-49926177)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-229)||(134537-134765)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-229)||(312364-312592)
scaffold0002 (1-229)||(327818-328046)
[»] chr5 (5 HSPs)
chr5 (1-229)||(10486603-10486831)
chr5 (36-229)||(34481176-34481369)
chr5 (115-229)||(587745-587859)
chr5 (174-215)||(23923092-23923133)
chr5 (184-221)||(27795720-27795757)
[»] chr3 (12 HSPs)
chr3 (1-229)||(49731615-49731843)
chr3 (31-229)||(30167057-30167255)
chr3 (36-229)||(2813218-2813411)
chr3 (36-229)||(29309637-29309830)
chr3 (36-229)||(6176196-6176389)
chr3 (108-229)||(9379326-9379447)
chr3 (157-229)||(23602002-23602074)
chr3 (165-229)||(25872955-25873019)
chr3 (157-214)||(8943596-8943653)
chr3 (184-223)||(48569905-48569944)
chr3 (186-224)||(46248738-46248776)
chr3 (171-223)||(18368808-18368860)
[»] chr1 (7 HSPs)
chr1 (1-229)||(21528390-21528622)
chr1 (36-229)||(36306013-36306206)
chr1 (36-229)||(37530795-37530988)
chr1 (82-229)||(32353061-32353208)
chr1 (36-229)||(48073149-48073342)
chr1 (148-229)||(48265548-48265629)
chr1 (157-229)||(30970447-30970519)
[»] chr7 (8 HSPs)
chr7 (1-229)||(15653388-15653616)
chr7 (31-183)||(46623968-46624120)
chr7 (36-229)||(13440282-13440475)
chr7 (36-217)||(12378446-12378627)
chr7 (157-229)||(45943080-45943152)
chr7 (100-223)||(43105546-43105669)
chr7 (186-224)||(27723973-27724011)
chr7 (158-223)||(41339760-41339825)
[»] chr8 (6 HSPs)
chr8 (36-229)||(7452581-7452774)
chr8 (36-226)||(16420728-16420918)
chr8 (158-223)||(12134563-12134628)
chr8 (180-229)||(19384572-19384621)
chr8 (175-221)||(13879344-13879390)
chr8 (173-221)||(7555684-7555732)
[»] chr2 (12 HSPs)
chr2 (31-229)||(45421748-45421947)
chr2 (82-229)||(13550353-13550500)
chr2 (36-228)||(26894330-26894522)
chr2 (36-228)||(26899769-26899961)
chr2 (82-229)||(43627728-43627875)
chr2 (133-229)||(31085452-31085548)
chr2 (133-229)||(33548101-33548197)
chr2 (82-151)||(13550884-13550953)
chr2 (174-223)||(36804147-36804196)
chr2 (174-229)||(22052856-22052911)
chr2 (185-223)||(36804362-36804400)
chr2 (175-221)||(40176905-40176951)
[»] scaffold0418 (1 HSPs)
scaffold0418 (45-229)||(7904-8088)
[»] chr6 (8 HSPs)
chr6 (82-229)||(25318083-25318230)
chr6 (82-229)||(26205577-26205724)
chr6 (36-229)||(23347185-23347378)
chr6 (82-229)||(15674054-15674205)
chr6 (177-221)||(33630334-33630378)
chr6 (158-221)||(4474935-4474998)
chr6 (199-229)||(1683269-1683299)
chr6 (157-223)||(5041753-5041819)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-106)||(4232-4337)
[»] scaffold0112 (1 HSPs)
scaffold0112 (158-223)||(15490-15555)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8654756 - 8654984
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654756 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 8654855  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8654856 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 8654955  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  8654956 ttagcggagtgtagggctttacttcttga 8654984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 47541381 - 47541154
Alignment:
Q  2 ggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaat 101  Q
    |||||||||||||| |||||||       |||| |||||||||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||||    
T  47541381 ggttggagatggagatgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgttcgtttttgtagactgtttgagttaacagagaat 47541282  T
Q  102 aagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgt 201  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||  ||| ||| ||||||||||||||||| | ||||||| |||| |||||||  |||    
T  47541281 aagttcatgtctgtggcagacttgttttctgttgattcggagcagccgggagttatgtggaggtggagacgtcgtttgtggcagtggaaggaggagatgt 47541182  T
Q  202 tagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||||||||||||||||    
T  47541181 tagcggagtgtagggctttacttcttga 47541154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 3129665 - 3129890
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||||||||        |||| | ||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  3129665 gggttggagatggagctgatacattgttttggtttggtaggtggttaggggatgttcctttttgtgtccgttttagtagactgtttgagttaacagagaa 3129764  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    |||||| |||||||||||||||||||| ||| ||||||||||||||   || |||  |||||||||||||||| | ||||||| ||||||||||    ||    
T  3129765 taagttcatgtctgtggcagacttgttctctattgattcggagcagctaggggttacgtggaggtggagacgttgtttgtggcagtgggaggag---atg 3129861  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  3129862 ttagcggagtgtagggctttacttcttga 3129890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 7662966 - 7663150
Alignment:
Q  45 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 144  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  7662966 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7663065  T
Q  145 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7663066 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7663150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 2631820 - 2631627
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  2631820 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 2631721  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2631720 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2631627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 23873240 - 23873387
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||  ||    
T  23873240 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggtaatg 23873339  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23873340 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23873387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 55298996 - 55298849
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| || || |||||| | |||||||||||||||| |||||| |   ||||||||||||||||||| || ||    
T  55298996 tgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtagtttatg 55298897  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  55298896 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 55298849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 20675444 - 20675251
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||||||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| ||| || ||||| |||||| | | |||||    
T  20675444 gataggtggttaggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatatccgtggccgacttgctctttgttg 20675345  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| | |  ||||||||| |||||||||||||    
T  20675344 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgcttgatgagtgtaggactttacttcttga 20675251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 8486699 - 8486892
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || |  |||||| | |||||||    
T  8486699 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgtcgacttgctctctgttg 8486798  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||| | |||||| |   |||||||||||||||||||||| |||| ||||||| |||| ||| |||   ||||||||||||||||||||||    
T  8486799 attcggaccggtggggggaggtgtggaggtggagacgtaggttatggcagtgggagaaggagttgctagattagtgtagggctttacttcttga 8486892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 49926112 - 49926177
Alignment:
Q  164 gtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||| || || ||||||  |||||||||||| ||||||| ||||||||||||||| || |||||    
T  49926112 gtggaggcggagattgtgggcgtgggaggaggagttgttagtggagtgtagggcttttctgcttga 49926177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 134537 - 134765
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134537 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 134636  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  134637 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 134736  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  134737 ttagcggagtgtagggctttacttcttga 134765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 312364 - 312592
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  312364 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 312463  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  312464 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 312563  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  312564 ttagcggagtgtagggctttacttcttga 312592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 327818 - 328046
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327818 gggttggagatggagctaatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 327917  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  327918 taagtttatgtctgtggcagacttgttatctattgattcggagcagtggggggttttgtggaggtggagacgtaggttgtggcagtgggaggaggacttg 328017  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  328018 ttagcggagtgtagggctttacttcttga 328046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10486603 - 10486831
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  10486603 gggttggagatggagctgatacgttgttttggttggataggtggttaggggatcttcctttttgtgtccgttttcgtaggctgtttgagttaacatagaa 10486702  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| ||||||||||||| ||    
T  10486703 taagttcatgtctgtggcagacttgttctctgttgattcggagcagcggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggacatg 10486802  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  10486803 ttagcggagtgtagggctttacttcttga 10486831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 34481369 - 34481176
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||||||||||| |||||| |||||||  | ||  || || |||||||||||||||||||||||| ||||||||||||| | ||| | |||||||    
T  34481369 gataggtggttaggggaggttcctctttgtgtgaggtttagtcggttgtttgagttaacagagaataagtctatgtctgtggcatatttgctctctgttg 34481270  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  34481269 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 34481176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 229
Target Start/End: Complemental strand, 587859 - 587745
Alignment:
Q  115 tggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 214  Q
    ||||| ||||||| |||||   ||||||||| ||||| | | | ||||||||||| |||||| | ||| |||||||||||||  |||||| |||||||||    
T  587859 tggcaaacttgttctctgtgagttcggagcattggggggatgtctggaggtggaggcgtaggctatggatgtgggaggaggatatgttagaggagtgtag 587760  T
Q  215 ggctttacttcttga 229  Q
    |||||||||||||||    
T  587759 ggctttacttcttga 587745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 23923133 - 23923092
Alignment:
Q  174 aggttgtggctgtgggaggaggacttgttagcggagtgtagg 215  Q
    ||||||||| |||||||||||||  |||||||||||||||||    
T  23923133 aggttgtgggtgtgggaggaggagatgttagcggagtgtagg 23923092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 27795757 - 27795720
Alignment:
Q  184 tgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  27795757 tgtgggaggaggacttggtagaggagtgtagggcttta 27795720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 49731615 - 49731843
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||||| ||        |||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  49731615 gggttggagatggagctgacacattgttttggtttgataggtggttaggggatgttcctttttgtgtccgttttcgtagactgtttgagttaacagagaa 49731714  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    |||||| |||| ||||||||||||||| ||||||||| |||||||| |||| ||| ||||||||||||||||||| ||||||| |||||||||||| |||    
T  49731715 taagttcatgtatgtggcagacttgttctctgttgatccggagcagcggggggttatgtggaggtggagacgtagtttgtggcagtgggaggaggagttg 49731814  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    || ||||||||||||||||||||||||||    
T  49731815 ttggcggagtgtagggctttacttcttga 49731843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 31 - 229
Target Start/End: Original strand, 30167057 - 30167255
Alignment:
Q  31 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 130  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  30167057 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtttgtggcagacttgttctc 30167156  T
Q  131 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||  |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||||||||||||||||| |||||||||||||    
T  30167157 tgttgatctggagcagcagggtgttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagcggagtgtaggactttacttcttga 30167255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 2813218 - 2813411
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  2813218 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 2813317  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  2813318 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 2813411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 29309830 - 29309637
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| ||||| |||||| | ||||| |    
T  29309830 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgtcg 29309731  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||| |||||||||||    
T  29309730 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggcgttacttcttga 29309637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 6176196 - 6176389
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||| ||||||||||| |||||| || || |||||| | |||||||    
T  6176196 gataggtggataggggaggctcctctttgtgtgcggtttagacggttgtttgagttaatagagaataagtctatgtccgtcgccgacttgctctctgttg 6176295  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| | || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  6176296 attcggagcggtggggggaggtgtggaggtggagacgtaggttatagcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 6176389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 9379447 - 9379326
Alignment:
Q  108 atgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcgg 207  Q
    |||| ||||||| ||||||| | ||||||||| ||||||||||| | ||||||||||||||| || ||||| |||| |||||||||||   |||||||||    
T  9379447 atgtatgtggcaaacttgttctatgttgattcagagcagtggggggatttgtggaggtggaggcgcaggttatggcagtgggaggaggggatgttagcgg 9379348  T
Q  208 agtgtagggctttacttcttga 229  Q
    |||||||||| ||||| |||||    
T  9379347 agtgtagggcattactacttga 9379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 23602074 - 23602002
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||||| |||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23602074 tgtggaggtggagacataggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23602002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 25872955 - 25873019
Alignment:
Q  165 tggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||| ||||    
T  25872955 tggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttactttttga 25873019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 8943653 - 8943596
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtag 214  Q
    |||||| |||||||||||||||||||  ||||||||| || |||| ||||||||||||    
T  8943653 tgtggaagtggagacgtaggttgtgggcgtgggaggaagatttgtaagcggagtgtag 8943596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 48569905 - 48569944
Alignment:
Q  184 tgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  48569905 tgtgggaggaggacttggtagaggagtgtagggctttact 48569944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 46248738 - 46248776
Alignment:
Q  186 tgggaggaggacttgttagcggagtgtagggctttactt 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  46248738 tgggaggaagacttgttaggggagtgtagggctttactt 46248776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 18368808 - 18368860
Alignment:
Q  171 cgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||||| ||||||||||||  ||| ||| |||||||||||| |||||    
T  18368808 cgtaggttgtgggtgtgggaggaggctttgctagaggagtgtagggcattact 18368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21528622 - 21528390
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21528622 gggttggagatgaagctgatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaacagagaa 21528523  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    |||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||| |||  ||||||||||||| ||    
T  21528522 taagttcatgtctgttggagacttgttctctgttgattcggagcaatggggggttatgtggaggtggagacgtaggttatggtagtgggaggaggacatg 21528423  T
Q  201 ttagcggag----tgtagggctttacttcttga 229  Q
    ||||||| |     |||||||||||||||||||    
T  21528422 ttagcggtggagacgtagggctttacttcttga 21528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 36306206 - 36306013
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||| ||||||||| | |||| ||||||||||||||| |||||||    
T  36306206 gataggtggttaggggatgttcctttctgtgtcctttttcgtagactgtttgagttaacggagaataagctcatgtatgtggcagacttgttctctgttg 36306107  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||| |||||||  |||||| ||||||||||||||||||||||||    
T  36306106 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtggaaggaggagatgttagaggagtgtagggctttacttcttga 36306013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 37530988 - 37530795
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||||||||||| |||||| |||||||  |  |  || || |||||||||||||||||||||||  ||||| ||||||||||||| | |||||||    
T  37530988 gataggtggttaggggaggttcctctttgtgtgagacttagtcggttgtttgagttaacagagaataagactatgtatgtggcagacttgctctctgttg 37530889  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  37530888 attcggagcggtggggggaagtgtggaggtggagacgtaggttatggcagtgggaggaggggttgctagaggagtgtagggctttacttcttga 37530795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 32353061 - 32353208
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||| ||||| |||||| | |||||||||||||||| |||||| |   |||||||||||||||||||||| ||    
T  32353061 tgtttgagttaacagagaataagtctatgtccgtggccgacttgctctctgttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatg 32353160  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||| ||||||| ||| |||  |||||||||||||||||||||||    
T  32353161 gcagtggaaggaggagttgctagatgagtgtagggctttacttcttga 32353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 48073149 - 48073342
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  48073149 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 48073248  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  48073249 attcggagcggtggggggaggtgtggaggtggagacgtaggttatgggagtgggaggaggagttgctagatgagtgtggggctttacttcttga 48073342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 48265548 - 48265629
Alignment:
Q  148 ggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  48265548 ggggggttatgtggaggtggagacgtaggttgtggcagtgggaggaggagttgttagcggagtgtagggctttacttcttga 48265629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 30970447 - 30970519
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||||||| ||||| ||||||  ||||||||||||  || | |||||||||||||| |||||||||||    
T  30970447 tgtggaggtggaggcgtagattgtgggcgtgggaggaggagatggtggcggagtgtagggccttacttcttga 30970519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15653388 - 15653616
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    |||||||||||||| ||||||||       |||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||    
T  15653388 gggttggagatggatctgatacgttgttttggtttgataggtggttaggggatgttcctttttgtgcccgttttcgtagactgtttgagttaacggagaa 15653487  T
Q  101 taagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttg 200  Q
    |||| | |||||| ||||||||||||| |||||||||| |||||||  ||| ||||| ||||||||||| ||||| ||||||| ||||||||||||  ||    
T  15653488 taagctcatgtctatggcagacttgttctctgttgatttggagcagcagggggttttctggaggtggaggcgtagattgtggcagtgggaggaggagatg 15653587  T
Q  201 ttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||    
T  15653588 ttagcggagtgtagggctttacttcttga 15653616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 46624120 - 46623968
Alignment:
Q  31 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 130  Q
    |||| |||||||||||||||||||||||||| ||||||||||| || || |||||||||||||| ||||||||| | |||||||||||||||||||| ||    
T  46624120 ggtttgataggtggttaggggatgttcctttctgtgtccgttttcgcagactgtttgagttaacggagaataagctcatgtctgtggcagacttgttctc 46624021  T
Q  131 tgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggc 183  Q
    |||||||| |||||||  |||  |||| ||||||||||| ||||| |||||||    
T  46624020 tgttgatttggagcagcagggatttttttggaggtggaggcgtagtttgtggc 46623968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 13440475 - 13440282
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  13440475 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgttgccgacttgctctctgttg 13440376  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   ||||||||||||||||||| || |||  |||||||||||| ||| |||  |||||| ||||||||||||||||    
T  13440375 attcggagcggtggggggaggtgtggaggtggagacgtagtttatggtagtgggaggaggagttgctagatgagtgttgggctttacttcttga 13440282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 12378446 - 12378627
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| |||||||||||||| | ||||  || |  | ||| |||||||||||||  ||||||||| | |||||||||||| | ||||| | ||||     
T  12378446 gataggtggataggggatgttcctctctgtgagcggtatcatagactgtttgagttaatggagaataagatcatgtctgtggcaaatttgttctttgtta 12378545  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggc 217  Q
    | ||| ||| |||||| | ||||| |||| |||| || |||||||||| ||||||||||||  |||||||||||||||||||    
T  12378546 agtcgaagcggtggggggatttgttgaggcggaggcgcaggttgtggcagtgggaggaggagatgttagcggagtgtagggc 12378627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 45943152 - 45943080
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||| |||| || |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  45943152 tgtggaggtggagatgtagattatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 45943080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 43105669 - 43105546
Alignment:
Q  100 ataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggactt 199  Q
    |||||| | |||| |||||||||||||| |||  |  |||| | || ||||| | ||||||||||||||| || ||||||||||  |||||||||||  |    
T  43105669 ataagtctttgtcggtggcagacttgttctctactagttcgcaacaatggggagatttgtggaggtggaggcgcaggttgtggcaatgggaggaggagat 43105570  T
Q  200 gttagcggagtgtagggctttact 223  Q
    |||||| ||||||||||| |||||    
T  43105569 gttagcagagtgtagggcgttact 43105546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 27723973 - 27724011
Alignment:
Q  186 tgggaggaggacttgttagcggagtgtagggctttactt 224  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  27723973 tgggaggaagacttgttaggggagtgtagggctttactt 27724011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 41339825 - 41339760
Alignment:
Q  158 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| || | |||||||||  |||||||||||| || |||| |||||||||| |||||||    
T  41339825 gtggaggtggcgatgcaggttgtgggcgtgggaggaggaattattagaggagtgtaggactttact 41339760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 7452774 - 7452581
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  7452774 gataggtggttaggggatgttcctttctgtgtccgttttcgtagactgtttgagttaacggagaataagcttatgtctgtggcagacttgttctctgttg 7452675  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||| |||||||  ||| ||| | ||||||||||| ||||| ||||||| |||||||||||  || |||| ||||||||||||||||||||||||    
T  7452674 atttggagcagcagggggttgtttggaggtggaggcgtagattgtggcagtgggaggaggtgttattagaggagtgtagggctttacttcttga 7452581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 16420728 - 16420918
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||||| |||||| | |||||||    
T  16420728 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtggccgacttgctctctgttg 16420827  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttct 226  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||| ||||||||||||||||    
T  16420828 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagcgtagggctttacttct 16420918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 12134628 - 12134563
Alignment:
Q  158 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| | |||| |||||||  |||||||||||||||| ||| ||||||||||||||||||    
T  12134628 gtggaggtggcggcgtacgttgtgggcgtgggaggaggacttggtagaggagtgtagggctttact 12134563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 19384572 - 19384621
Alignment:
Q  180 tggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  19384572 tggcagtgggaggaggagatgttagtggagtgtagggctttacttcttga 19384621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 13879344 - 13879390
Alignment:
Q  175 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  13879344 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 13879390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 7555732 - 7555684
Alignment:
Q  173 taggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||| ||||||||||| | || |||| ||||||||||||||||    
T  7555732 taggttgtgggtgtgggaggagaatttattagaggagtgtagggcttta 7555684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 229
Target Start/End: Complemental strand, 45421947 - 45421748
Alignment:
Q  31 ggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatc 130  Q
    |||||||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||||| | |||| ||||||||||||||| ||    
T  45421947 ggttggataggtggttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaacagagaataagctcatgtatgtggcagacttgttctc 45421848  T
Q  131 tgttgattcggagcag-tggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||  |||||||  ||||  |||| ||||||||||| ||||| |||| || ||||||||||||  |||||||||||||||||||||| ||||||||    
T  45421847 tgttgatctggagcagcaggggttttttttggaggtggaggcgtagattgtcgcagtgggaggaggagatgttagcggagtgtagggcttttcttcttga 45421748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 13550500 - 13550353
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| ||| |  ||||| |||||| | ||||||||||||||||||||||| | | |||||||||||||||||||||| ||    
T  13550500 tgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtggggggatgtgtggaggtggagacgtaggttatg 13550401  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||| ||||||||| ||| |||||| ||||||||| |||||||    
T  13550400 gcagtgggatgaggacttgctagaggagtgcagggctttaattcttga 13550353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 26894330 - 26894522
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26894330 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26894429  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 228  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26894430 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26894522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 26899769 - 26899961
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||||||  | |||||| | |||||||    
T  26899769 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtctgtcaccgacttgctctctgttg 26899868  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttg 228  Q
     |||||||| ||||||     |||||||||||||||||||||| |||| |||||||||||| ||| |||  ||||||||||||||||||||||    
T  26899869 cttcggagcggtgggggaaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttg 26899961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 43627875 - 43627728
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| | ||| |||||||||||  |||||| |   |||||||||||||||||||||| ||    
T  43627875 tgtttgagttaacagagaataagtctatgttcgtggccgacttgctctctattgattcggagaggtggggggaggtgtggaggtggagacgtaggttatg 43627776  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||||||||| ||| |||  |||||||||||||||||||||||    
T  43627775 gcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 43627728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Original strand, 31085452 - 31085548
Alignment:
Q  133 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||| ||||||||||| | | |||||||||||||| | |||||||| | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  31085452 ttgattcagagcagtggggggatgtgtggaggtggagatgcaggttgtgacagtgggaggaggagctgttagcagagtgtagggctttacttcttga 31085548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 33548197 - 33548101
Alignment:
Q  133 ttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  33548197 ttgattcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 33548101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 13550953 - 13550884
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtgggg 151  Q
    |||||||||||||||||||||||| ||| |  ||||| |||||| | |||||||||||||||||||||||    
T  13550953 tgtttgagttaacagagaataagtctatattcgtggcggacttgctttctgttgattcggagcagtgggg 13550884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 36804196 - 36804147
Alignment:
Q  174 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||  |||||||||||||||||||| ||||||||||||||||||    
T  36804196 aggttgtgggcgtgggaggaggacttgttagaggagtgtagggctttact 36804147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 22052911 - 22052856
Alignment:
Q  174 aggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  22052911 aggttatggcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 22052856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 36804400 - 36804362
Alignment:
Q  185 gtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  36804400 gtgggaggaggacttgttagaggagtgtagggctttact 36804362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Complemental strand, 40176951 - 40176905
Alignment:
Q  175 ggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||| ||| ||||||||||||||||| ||| ||||||||||||||||    
T  40176951 ggttatgggtgtgggaggaggacttggtagaggagtgtagggcttta 40176905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 45 - 229
Target Start/End: Complemental strand, 8088 - 7904
Alignment:
Q  45 ttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagc 144  Q
    |||||||||||||| || ||||||||||| |||||  |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||||| |||||    
T  8088 ttaggggatgttccgttctgtgtccgttttcgtagattgtttgagttaatagagaataagctcatgtctatggcagacttgttctctgttgatttggagc 7989  T
Q  145 agtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||  |||  |||| ||||||||||| ||||| ||||||| ||||||||||||  |||||| |||||||| |||||||||||||||    
T  7988 agcaggggtttttttggaggtggaggcgtagattgtggcagtgggaggaggagatgttagtggagtgtatggctttacttcttga 7904  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 25318230 - 25318083
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  25318230 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 25318131  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  25318130 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 25318083  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 26205724 - 26205577
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggcgttttgtggaggtggagacgtaggttgtg 181  Q
    |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||  ||| |||||| | |||||||||||||| ||||||||| ||    
T  26205724 tgtttgagttaacaaagaataagtttatgtccgtggcggacttgctatctgttgattcaaagcggtggggggatttgtggaggtggatacgtaggttatg 26205625  T
Q  182 gctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    || |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  26205624 gcagtgggaggaggagttgctagaggagtgtagggctttacttcttga 26205577  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 229
Target Start/End: Original strand, 23347185 - 23347378
Alignment:
Q  36 gataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttg 135  Q
    ||||||||| ||||||| | |||| ||||||| || ||  |  || |||||||||||||||||||||||| |||||| || || |||||| | |||||||    
T  23347185 gataggtggataggggaggctcctctttgtgtgcggtttaggcggttgtttgagttaacagagaataagtctatgtccgtcgccgacttgctctctgttg 23347284  T
Q  136 attcggagcagtggggcgttttgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    ||||||||| |||||| |   |||||||||||||||||||||| |||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  23347285 attcggagcggtggggggaggtgtggaggtggagacgtaggttatggcagtgggaggaggagttgctagatgagtgtagggctttacttcttga 23347378  T

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Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 15674205 - 15674054
Alignment:
Q  82 tgtttgagttaacagagaataagtttatgtctgtggcagacttgttatctgttgattcggagcagtggggc----gttttgtggaggtggagacgtaggt 177  Q
    ||||||||||||| |||||||||| |||||||||||| |||||  | ||||||||||| ||||  ||||||    |   |||||||||||||||||||||    
T  15674205 tgtttgagttaacggagaataagtctatgtctgtggccgacttactctctgttgattcagagcgttggggccggggaggtgtggaggtggagacgtaggt 15674106  T
Q  178 tgtggctgtgggaggaggacttgttagcggagtgtagggctttacttcttga 229  Q
    |||||| |||||||||||| ||| |||  ||||| |||||||||||||||||    
T  15674105 tgtggcagtgggaggaggagttgctagatgagtgcagggctttacttcttga 15674054  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 33630378 - 33630334
Alignment:
Q  177 ttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  33630378 ttgtggcagtgggaggaggagatgttagcggagtgtagggcttta 33630334  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 4474998 - 4474935
Alignment:
Q  158 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggcttta 221  Q
    |||||||||||||||||||||||||  |||||||||| | || |||| ||||| |||| |||||    
T  4474998 gtggaggtggagacgtaggttgtgggcgtgggaggagaatttattagaggagtttaggacttta 4474935  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 1683299 - 1683269
Alignment:
Q  199 tgttagcggagtgtagggctttacttcttga 229  Q
    |||||||||||||||||||||||||||||||    
T  1683299 tgttagcggagtgtagggctttacttcttga 1683269  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 5041819 - 5041753
Alignment:
Q  157 tgtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    ||||||||||| | ||| | |||||| |||||||||| || ||||||| |||||||||||| |||||    
T  5041819 tgtggaggtggcgtcgtggtttgtgggtgtgggaggaagagttgttagaggagtgtagggcattact 5041753  T

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Target: scaffold0131 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4232 - 4337
Alignment:
Q  1 gggttggagatggagctgatacgnnnnnnnggttggataggtggttaggggatgttcctttttgtgtccgtttccgtaggctgtttgagttaacagagaa 100  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  4232 gggttggagatggagctcatacgttgttttggttggataggtggttaggggatgttcctttttgtgtccgttttcgtaggctgtttgagttaatagagaa 4331  T
Q  101 taagtt 106  Q
    ||||||    
T  4332 taagtt 4337  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 223
Target Start/End: Original strand, 15490 - 15555
Alignment:
Q  158 gtggaggtggagacgtaggttgtggctgtgggaggaggacttgttagcggagtgtagggctttact 223  Q
    |||||||||| | || || ||||||  ||||||||||||  |||||| ||||||||||||||||||    
T  15490 gtggaggtggcgtcgcagattgtgggcgtgggaggaggatatgttagaggagtgtagggctttact 15555  T

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