View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_466 (Length: 229)
Name: NF10855A_low_466
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_466 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4338192 - 4338414
Alignment:
| Q |
1 |
ttggggcacaatctgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttggttgggc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338192 |
ttggggcacaatatgagcctgctaagaggattgtttgtgctgcttctagtggtgttctggctgttacttttgcggttgttaggatgtatcttggttgggc |
4338291 |
T |
|
| Q |
101 |
ttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttatgtctaagattataatttataatcatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4338292 |
ttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctctactttttaatcttatgtctaagattataatttataatcatgg |
4338391 |
T |
|
| Q |
201 |
aaataaacaaaaatgaaagtttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
4338392 |
aaataaacaaaaatgaaagtttt |
4338414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University