View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_470 (Length: 229)
Name: NF10855A_low_470
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_470 |
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Alignment Details
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 5230326 - 5230428
Alignment:
| Q |
109 |
tagatagaaaatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgtaagtttagatactg |
208 |
Q |
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| T |
5230326 |
tagattgagaatgagtatggacctgtggaatgggaaattggtgctcctggaaaggcttacacaaaatgggctgctcaaatggctgtaggtctagatactg |
5230425 |
T |
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| Q |
209 |
gtg |
211 |
Q |
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| T |
5230426 |
gtg |
5230428 |
T |
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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 17125401 - 17125478
Alignment:
| Q |
118 |
aatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatggtttgctcaaatggctgta |
195 |
Q |
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| T |
17125401 |
aatgagtatggaccagtggaatgggaaattggtgcacctggaaaatcttacaccaaatggttttctcaaatggctgta |
17125478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 42989443 - 42989374
Alignment:
| Q |
108 |
gtagatagaaaatgagtatggaccagtggagtgggaaattggtgctcctggaaaagcttataccaaatgg |
177 |
Q |
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| T |
42989443 |
gtagattgaaaatgaatatggacctatggagtatgaaattggtgctcctggtaaatcctacaccaaatgg |
42989374 |
T |
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Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 52549172 - 52549112
Alignment:
| Q |
17 |
ttatattgctagaaaggtttaagctggccaattacattattgcagcaataatgatcataat |
77 |
Q |
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| T |
52549172 |
ttatattgctagaaaggtttaagctggccaattacattattgcagtaataatgatcataat |
52549112 |
T |
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