View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_472 (Length: 229)
Name: NF10855A_low_472
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_472 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 4584726 - 4584498
Alignment:
| Q |
1 |
aatagtatcaatccagattgaatgcggtcactaagattgaatccagattgctaacattatggaatgttagatgaaatacggacagtttgtgttttgaatt |
100 |
Q |
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| T |
4584726 |
aatattatcaatccagattgaatgcagtcactaagattgaatccagattgctgacattatggaatgttagatgaaatacggacagtttgtgttttgaatt |
4584627 |
T |
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| Q |
101 |
ttgaaatcggatttacataaaacttaaaattataaccatctgatcttcatatatggccgagattacaacagtaggaaatgctgactgcaaatcatgacag |
200 |
Q |
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| T |
4584626 |
ttgaaatcggatttacataaaacttaaaattataaccatccgatcttcatatatggccgagattacaacagtaggaaatgctgactgcaaatcatgacag |
4584527 |
T |
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| Q |
201 |
ggtaaaacatttgtctagattaatctcat |
229 |
Q |
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| T |
4584526 |
ggtaaaatatttgtctagattaatctcat |
4584498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 151 - 202
Target Start/End: Complemental strand, 4592380 - 4592329
Alignment:
| Q |
151 |
atatggccgagattacaacagtaggaaatgctgactgcaaatcatgacaggg |
202 |
Q |
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| T |
4592380 |
atatggccgagactaccacagtaggaaatgctgacagcaaatcatgacaggg |
4592329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 4592467 - 4592410
Alignment:
| Q |
58 |
tatggaatgttagatgaaatacggacagtttgtgttttgaattttgaaatcggattta |
115 |
Q |
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| T |
4592467 |
tatggattgttagaggaagtacgaacggtttgtgttttaaattttgaaatctgattta |
4592410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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