View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_478 (Length: 228)

Name: NF10855A_low_478
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_478
NF10855A_low_478
[»] chr7 (20 HSPs)
chr7 (39-175)||(21681249-21681385)
chr7 (36-146)||(21740671-21740781)
chr7 (45-165)||(21704307-21704426)
chr7 (36-156)||(21627746-21627866)
chr7 (107-175)||(21622745-21622813)
chr7 (36-156)||(21713825-21713942)
chr7 (38-110)||(21651734-21651806)
chr7 (36-105)||(21784566-21784635)
chr7 (36-96)||(21663698-21663758)
chr7 (121-217)||(21991458-21991553)
chr7 (36-104)||(21725571-21725639)
chr7 (46-101)||(21784691-21784746)
chr7 (46-104)||(21771645-21771703)
chr7 (37-92)||(21991408-21991463)
chr7 (37-88)||(21622693-21622744)
chr7 (36-217)||(21689035-21689209)
chr7 (61-99)||(21787911-21787949)
chr7 (36-156)||(21791645-21791762)
chr7 (36-122)||(21639321-21639404)
chr7 (36-70)||(21791419-21791453)
[»] scaffold0182 (1 HSPs)
scaffold0182 (36-104)||(34209-34277)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 21681249 - 21681385
Alignment:
Q  39 agcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaa 138  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||| |||||||| |||    
T  21681249 agcaaagatccaatttccatgaattttacttttcttgtccattgagtaaagtgatagacattatatagtttgttctgaggacaagttgctttagtagcaa 21681348  T
Q  139 agaggacaggtataaaaaatatattaaagtgaagtgt 175  Q
    |||||||||||||||||||| ||||||||||||||||    
T  21681349 agaggacaggtataaaaaatctattaaagtgaagtgt 21681385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 21740671 - 21740781
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  21740671 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtgatggacattatatagtttgttatgaggacaagttactttagtaa 21740770  T
Q  136 caaagaggaca 146  Q
    |||||||||||    
T  21740771 caaagaggaca 21740781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 21704307 - 21704426
Alignment:
Q  45 gatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaacaaagagga 144  Q
    |||||| |||||  |||||||||||||||||| ||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  21704307 gatcctgtttccgagaattttacttttcttgtacattgagtaaagtgatggacattatata-tttgttctgaggacaagttactttagtaacaaagagga 21704405  T
Q  145 caggtataaaaaatatattaa 165  Q
    |||||||||||||||||||||    
T  21704406 caggtataaaaaatatattaa 21704426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 21627746 - 21627866
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |     
T  21627746 aaaagcaacgatcctatttccatgaattttacttttcttgtccgttgagtaaagtgatggacattatatagtttgttctgaggacaagttactttagcag 21627845  T
Q  136 caaagaggacaggtataaaaa 156  Q
      |||||||||||||||||||    
T  21627846 tgaagaggacaggtataaaaa 21627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 21622745 - 21622813
Alignment:
Q  107 tttgctctgaggacaagttactttagtaacaaagaggacaggtataaaaaatatattaaagtgaagtgt 175  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  21622745 tttgttctgaggacaagttactttagtaaaaaagaggacaggtataaaaaatctattaaagtgaagtgt 21622813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 21713825 - 21713942
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||||   |||||   |||||||| | || |||||||||||||||||| |     
T  21713825 aaaagcaaagatcttttttccatgaattttacttttcttgtccattgagtaaagcggtggac---atatagttcgttccgaggacaagttactttagcag 21713921  T
Q  136 caaagaggacaggtataaaaa 156  Q
      ||||||||| |||||||||    
T  21713922 tgaagaggacaagtataaaaa 21713942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 21651734 - 21651806
Alignment:
Q  38 aagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttg 110  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||    
T  21651734 aagcaaagatcctttttccatgaattttacatttcttgtccattgagtaaagtggtagacattatatagtttg 21651806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 21784566 - 21784635
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatata 105  Q
    ||||||||  ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  21784566 aaaagcaaatatcctttttccgtgaattttacttttcttgtccaatgagtaaagtgatggacattatata 21784635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 21663698 - 21663758
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatgga 96  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||    
T  21663698 aaaagcaatgatcctatttccatgaattttacttttcttgtccattgagcaaagtgatgga 21663758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 21991458 - 21991553
Alignment:
Q  121 aagttactttagtaacaaagaggacaggtataaaaaatatattaaagtgaagtgtaacannnnnnngaagcaagcatatttacttaacttgttcatt 217  Q
    ||||||||||||||  |||||||||| ||||||||||| ||||||||||||||||||||        ||||||||||||||||||| ||||||||||    
T  21991458 aagttactttagtagtaaagaggacaagtataaaaaatctattaaagtgaagtgtaacattttttt-aagcaagcatatttacttatcttgttcatt 21991553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 21725571 - 21725639
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21725571 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21725639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 21784691 - 21784746
Alignment:
Q  46 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacatta 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  21784691 atcctttttccgtgaattttacttttcttgtccattgagtaaagtgatgaacatta 21784746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 21771645 - 21771703
Alignment:
Q  46 atcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  21771645 atcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 21771703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 21991408 - 21991463
Alignment:
Q  37 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagtta 92  Q
    |||||||  ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  21991408 aaagcaaatatcctttttccatgaatttcacttttcttgtctattgagtaaagtta 21991463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 21622693 - 21622744
Alignment:
Q  37 aaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaa 88  Q
    ||||||| ||| || ||||||||||||||||||||||||||||| |||||||    
T  21622693 aaagcaaagatactatttccatgaattttacttttcttgtccatcgagtaaa 21622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 21689035 - 21689209
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||  |||| ||||||||||||||||||||||||  ||||||||| ||||  |||||    | ||||| | || ||| |||||||||||||| |     
T  21689035 aaaagcaaatatcccttttccatgaattttacttttcttccccattgagttaagtggtggac---gtgtagttcgttccgagaacaagttactttagcag 21689131  T
Q  136 caaagaggacaggtataaaaaatatattaaagt-gaagtgtaacannnnnnngaagcaagcatatttacttaacttgttcatt 217  Q
      |||||||||||||||||||  || ||||||| ||||||||| |        ||||||||||||||||||| ||||||||||    
T  21689132 tgaagaggacaggtataaaaatcat-ttaaagtggaagtgtaatatttt----aagcaagcatatttacttatcttgttcatt 21689209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 21787911 - 21787949
Alignment:
Q  61 attttacttttcttgtccattgagtaaagttatggacat 99  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  21787911 attttacttttcttgtccattgagtaaagtgatggacat 21787949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 21791645 - 21791762
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaagttactttagtaa 135  Q
    ||||||||  |||| |||||||||||||||||||||||| |||||||||| || |  |||||    | ||||| | || ||| |||||||||||||| |     
T  21791645 aaaagcaaatatcccttttccatgaattttacttttcttctccattgagttaactggtggac---gtgtagttcgttccgagaacaagttactttagcag 21791741  T
Q  136 caaagaggacaggtataaaaa 156  Q
      |||||||||||||||||||    
T  21791742 tgaagaggacaggtataaaaa 21791762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 21639321 - 21639404
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatatagtttgctctgaggacaa 122  Q
    |||||||| |||||||||| ||| |||||||||| | |||| |||||||||||||  |||||   |||||||||| | |||||||||    
T  21639321 aaaagcaaagatccttttttcattaattttacttattttgtacattgagtaaagtggtggac---atatagtttgttatgaggacaa 21639404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 21791419 - 21791453
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttt 70  Q
    |||||||| ||||||||||||||||||||||||||    
T  21791419 aaaagcaaagatcctttttccatgaattttacttt 21791453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 34209 - 34277
Alignment:
Q  36 aaaagcaatgatcctttttccatgaattttacttttcttgtccattgagtaaagttatggacattatat 104  Q
    ||||||||  ||||||||||  |||||||||||||||||||||| |||||||||| |||||||||||||    
T  34209 aaaagcaaatatcctttttctgtgaattttacttttcttgtccaatgagtaaagtgatggacattatat 34277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University