View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_479 (Length: 228)
Name: NF10855A_low_479
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_479 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 49165608 - 49165389
Alignment:
| Q |
1 |
gcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
100 |
Q |
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| T |
49165608 |
gcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaactacaatag |
49165509 |
T |
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| Q |
101 |
ttgcannnnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaacattttgt |
200 |
Q |
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| T |
49165508 |
ttgca--tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaacattttgt |
49165411 |
T |
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| Q |
201 |
attaaatagtgtatggtagaac |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
49165410 |
attaaatagtgtatggtagaac |
49165389 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 43752004 - 43751932
Alignment:
| Q |
13 |
tttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctattt |
85 |
Q |
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|||||||| ||||| ||||| ||||||||||||||| | | || |||||||||||||||||| ||||||| |
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| T |
43752004 |
tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaatttacaaataagctacatctattt |
43751932 |
T |
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