View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_480 (Length: 228)
Name: NF10855A_low_480
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_480 |
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Alignment Details
Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 34690822 - 34690944
Alignment:
| Q |
7 |
ttcccttcatcgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34690822 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
34690921 |
T |
|
| Q |
107 |
gtcattattagtatttattagaa |
129 |
Q |
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| T |
34690922 |
gtcattattagtatttattagaa |
34690944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 34691008 - 34691042
Alignment:
| Q |
194 |
cattgtaacttactgtcatagagcatgagacctcg |
228 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34691008 |
cattgtaacttactgtcatagagcatgagacctcg |
34691042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 26988746 - 26988868
Alignment:
| Q |
7 |
ttcccttcatcgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
106 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26988746 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt |
26988845 |
T |
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| Q |
107 |
gtcattattagtatttattagaa |
129 |
Q |
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||||| ||||||||||||||||| |
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| T |
26988846 |
gtcataattagtatttattagaa |
26988868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
| Q |
7 |
ttcccttcatcgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggtaat |
73 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
27076513 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat |
27076447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
| Q |
7 |
ttcccttcatcgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggtaatatgccaaccgatgcacc |
90 |
Q |
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| T |
21432814 |
ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc |
21432896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
| Q |
17 |
cgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggtaat |
73 |
Q |
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| T |
27028074 |
cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat |
27028130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 26988933 - 26988967
Alignment:
| Q |
194 |
cattgtaacttactgtcatagagcatgagacctcg |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
26988933 |
cattgtaacttactgtcatagagcatgagacctcg |
26988967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 27099615 - 27099551
Alignment:
| Q |
7 |
ttcccttcatcgtttgagcccagaaggaatgcatttaaaaacacatacagattctctagaaggta |
71 |
Q |
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||||||||||| ||||| |||| ||| |||||| || ||||| ||||||||||||||||||||| |
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| T |
27099615 |
ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggta |
27099551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 27151628 - 27151687
Alignment:
| Q |
9 |
cccttcatcgtttgagccc-agaaggaatgcatttaaaaacacatacagattctctagaa |
67 |
Q |
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||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| |
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| T |
27151628 |
cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaa |
27151687 |
T |
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