View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_485 (Length: 228)
Name: NF10855A_low_485
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_485 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 25745212 - 25745433
Alignment:
| Q |
5 |
ttacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggtttaagtaataatgacttgaagcatacctgagaaagatg |
104 |
Q |
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| T |
25745212 |
ttacatgctataaaaattcacattggacgattaatcgtctcacgatttaccactatactggtttaagtaatgatgacttgaagcatacctgagaaagatg |
25745311 |
T |
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| Q |
105 |
aaggactctcgaagtatgagggtccaagcctccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggacttgtactaaaacca |
204 |
Q |
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| T |
25745312 |
gaggactctagaagtatgagggtccaagcctccaactttagtcatggatggatattgccacaaacacagttggttgtgttctggacttgtactaaagcca |
25745411 |
T |
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| Q |
205 |
tgaccacttaatatctctttgt |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
25745412 |
tgaccacttaatatctctttgt |
25745433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 4348837 - 4348615
Alignment:
| Q |
1 |
attattacatgctttaaaaattcacattggacgattaatcgtctctcgatttaccactatactggtttaagtaataatgacttgaagcatacctgagaaa |
100 |
Q |
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| T |
4348837 |
attattacatgctttaaaaattcacattggatgattaatcgtctctcgatttaccactatactggtttaagtaattatgacttgaagcatacctgagaaa |
4348738 |
T |
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| Q |
101 |
gatgaaggactctcgaagtatgagggtccaagcctccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggacttgtactaaa |
200 |
Q |
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| T |
4348737 |
gatggaggactctagaagtatggggatccaagccaccaactttagtcatagatggatattgccacaaacacagttggttgtgttctggacttgtactaaa |
4348638 |
T |
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| Q |
201 |
acc---atgaccacttaatatct |
220 |
Q |
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| T |
4348637 |
gccatgatgaccacttaatatct |
4348615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 18928523 - 18928679
Alignment:
| Q |
85 |
aagcatacctgagaaagatgaaggactctcga---agtatgagggtccaagcctccaactttagtcatagatgg-----------atattgccacaaaca |
170 |
Q |
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| T |
18928523 |
aagcatacctgagaaagatggaggactctggaggaagtatgagggttcaagcctccaagtttggtcatagatgatggatattggcatattgccacaaaca |
18928622 |
T |
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| Q |
171 |
cagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctctttgtg |
227 |
Q |
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| T |
18928623 |
cagttggttatgttttggatttgtactaaagctatgaccacttgatatctctttgtg |
18928679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 36840973 - 36841046
Alignment:
| Q |
151 |
gatggatattgccacaaacacagttggttgtgttctggacttgtactaaaaccatgaccacttaatatctcttt |
224 |
Q |
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| T |
36840973 |
gatggatattgccacaaacacagttggtaatgttttggatttgtactaaagtcatgaccacttaatatctcttt |
36841046 |
T |
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