View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_489 (Length: 227)
Name: NF10855A_low_489
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_489 |
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| [»] scaffold0007 (3 HSPs) |
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Alignment Details
Target: scaffold0007 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 149368 - 149533
Alignment:
| Q |
49 |
ttttcaaaataaatatcactatcatctatcacccctttttcaaaattattttctttttaacttaaaaccctattttctcaacaaaaaataaacattacaa |
148 |
Q |
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| T |
149368 |
ttttcgaaataaacatcactatcatttatcacccctttttcaaaattattttctttttaacttaaaaccctattttctcaacaaaaaataaacattacaa |
149467 |
T |
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| Q |
149 |
caccaacataaagatagatagatacgtttgttctacttccttcttttcctctctccattagaacca |
214 |
Q |
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| T |
149468 |
caccaacataaagatagatagatacgtttgttctacttccttcttttcctctctccattagaacca |
149533 |
T |
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Target: scaffold0007; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 148929 - 149015
Alignment:
| Q |
54 |
aaaataaatatcactatcatctatcacccctttttcaaaattattttctttttaacttaaaaccctattttctcaacaaaaaataaa |
140 |
Q |
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| T |
148929 |
aaaataaacatcactatcatctaccacccctctttcataattattttctttttaacttaaaaccctattttctcaacaaaaaataaa |
149015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 148855 - 148922
Alignment:
| Q |
63 |
atcactatcatctatcacccctt-tttcaaaattattttctttttaacttaaaaccctattttctcaa |
129 |
Q |
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| T |
148855 |
atcactgtcatctatcaccccctcttttaacattattttctttttaactttaaaccctaatttctcaa |
148922 |
T |
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