View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_492 (Length: 226)
Name: NF10855A_low_492
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_492 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 4842827 - 4842651
Alignment:
| Q |
31 |
gacatagttaattattacaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
130 |
Q |
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||||||||||||||| ||||||||||||| |||||||| ||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
4842827 |
gacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
4842728 |
T |
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| Q |
131 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatct |
207 |
Q |
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|||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4842727 |
aacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatct |
4842651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 5172698 - 5172864
Alignment:
| Q |
31 |
gacatagttaattattacaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
130 |
Q |
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||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
5172698 |
gacatagttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
5172797 |
T |
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| Q |
131 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttca |
197 |
Q |
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| T |
5172798 |
aacttaacaaacctcagaattcttgaccttagccataatctattcagtggaaattttccatccttca |
5172864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 31 - 207
Target Start/End: Original strand, 5195424 - 5195600
Alignment:
| Q |
31 |
gacatagttaattattacaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
130 |
Q |
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||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||| |||||||| ||||||||| |||||||||||| || ||||||||| |
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| T |
5195424 |
gacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagc |
5195523 |
T |
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| Q |
131 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatct |
207 |
Q |
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|||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||| |||| || |||||| |
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| T |
5195524 |
aacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatct |
5195600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 5159789 - 5159958
Alignment:
| Q |
38 |
ttaattattacaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaa |
137 |
Q |
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|||||||| ||||||||||||| |||||||| ||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
5159789 |
ttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaa |
5159888 |
T |
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| Q |
138 |
caaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatct |
207 |
Q |
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||||||||||||||||||| ||| | ||||||||||||| |||||| |||||||| |||| || |||||| |
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| T |
5159889 |
caaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatct |
5159958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 5182037 - 5182206
Alignment:
| Q |
38 |
ttaattattacaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaa |
137 |
Q |
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|||||||| ||||||||||||| |||||||| |||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
5182037 |
ttaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaa |
5182136 |
T |
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| Q |
138 |
caaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatct |
207 |
Q |
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| T |
5182137 |
caaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatct |
5182206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 47 - 197
Target Start/End: Original strand, 5213606 - 5213756
Alignment:
| Q |
47 |
acaggactatgcagtttgaagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaacaaacctca |
146 |
Q |
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||||||||||||| ||||||| ||||||||| || || |||||| ||||||||||| || ||||||| |||||||||||||||||||||||||| | |
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| T |
5213606 |
acaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacctga |
5213705 |
T |
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| Q |
147 |
gagttcttgaccttggcaataatctgttcactggaaattttccatccttca |
197 |
Q |
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|||||||| ||| || ||||| |||||| |||||||||||||||||||| |
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| T |
5213706 |
atgttcttgaacttagctataatttgttcagtggaaattttccatccttca |
5213756 |
T |
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