View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_493 (Length: 226)

Name: NF10855A_low_493
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_493
NF10855A_low_493
[»] chr1 (4 HSPs)
chr1 (12-208)||(7386417-7386613)
chr1 (49-185)||(19991215-19991350)
chr1 (102-186)||(19322649-19322733)
chr1 (12-43)||(19322751-19322782)
[»] chr5 (3 HSPs)
chr5 (12-209)||(4925202-4925404)
chr5 (49-209)||(35205787-35205947)
chr5 (68-209)||(35211203-35211344)
[»] chr2 (2 HSPs)
chr2 (114-210)||(39375508-39375604)
chr2 (12-55)||(39375627-39375670)
[»] chr3 (2 HSPs)
chr3 (49-207)||(52314493-52314651)
chr3 (49-205)||(53464903-53465059)
[»] chr4 (2 HSPs)
chr4 (52-208)||(23563558-23563714)
chr4 (80-208)||(48265287-48265415)
[»] chr8 (1 HSPs)
chr8 (93-210)||(40278487-40278604)
[»] chr7 (1 HSPs)
chr7 (106-207)||(45888843-45888944)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 7386417 - 7386613
Alignment:
Q  12 tatactattaattaaaagaaataaaactcaaagtattacaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  7386417 tatactattaattaaaagaaataaaactcaaagtattacaaaatctgacaattacaggaaaaggaacgtagtaatgcattgctaccatgtataatttaac 7386516  T
Q  112 tactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 208  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||    
T  7386517 tactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggatgggcgatgtgtatgctcttag 7386613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 185
Target Start/End: Complemental strand, 19991350 - 19991215
Alignment:
Q  49 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatga 148  Q
    |||||||| ||||||| | |||||||||| |||||||| ||||  ||||| | ||||||||||||||||||| ||| |||||||||| ||||| ||||||    
T  19991350 acaaaatc-aacaattgcaggaaaaggaaggtagtaatccattattaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatga 19991252  T
Q  149 cacgagagcattggttagtgtgataccacccatatgg 185  Q
    ||| | ||||||||  |||||||||||||||||||||    
T  19991251 cacaaaagcattgggcagtgtgataccacccatatgg 19991215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 19322733 - 19322649
Alignment:
Q  102 atagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatgga 186  Q
    |||||||||||||||||||| ||||||||||||  ||||||||||||||| ||| | ||||||| ||| ||||||||||||||||    
T  19322733 atagtttaactactcaattctaaagccaattattcatgatattatgacacaagaacgttggttattgtaataccacccatatgga 19322649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 43
Target Start/End: Complemental strand, 19322782 - 19322751
Alignment:
Q  12 tatactattaattaaaagaaataaaactcaaa 43  Q
    ||||||||||||||||||||||||||||||||    
T  19322782 tatactattaattaaaagaaataaaactcaaa 19322751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 4925202 - 4925404
Alignment:
Q  12 tatactattaattaaaagaaataaaactcaaagtatt-----------acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccagg 100  Q
    |||||||||||||||||||||||| ||||||||||||           | ||||||||||||||||      |||||||||||||||||||| ||||| |    
T  4925202 tatactattaattaaaagaaataatactcaaagtattctaaaatatgtataaaatctaacaattac------aggaacgtagtaatgcattgttaccatg 4925295  T
Q  101 tatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4925296 tatagtttaactactcaattccaaagccaattatccatgatattatgacacaagagcattggttagtgtgataccacccatatggacagacgatgcgtat 4925395  T
Q  201 gctcttagt 209  Q
    |||||||||    
T  4925396 gctcttagt 4925404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 35205787 - 35205947
Alignment:
Q  49 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatga 148  Q
    ||||||||  |||||| | |||||||||| | ||||||||||| || ||| | |||||||||| |||||||| ||| |||||||||  ||||| ||||||    
T  35205787 acaaaatcagacaattgcaggaaaaggaaggcagtaatgcattacttccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatga 35205886  T
Q  149 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagt 209  Q
    ||| | |||||||| || ||||||||||||||||||  ||| ||||||| |||||||||||    
T  35205887 cacaaaagcattgggtaatgtgataccacccatatgtgcaggcgatgtgcatgctcttagt 35205947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 35211344 - 35211203
Alignment:
Q  68 ggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagt 167  Q
    |||||||||| | ||||||||||| |||||| | |||||||||| |||||||| ||| |||||||||  ||||| ||||||||| | |||||||| || |    
T  35211344 ggaaaaggaaggcagtaatgcattactaccatggatagtttaaccactcaatttcaatgccaattattcatgatcttatgacacaaaagcattgggtaat 35211245  T
Q  168 gtgataccacccatatggacagacgatgtgtatgctcttagt 209  Q
    |||||||||||||||||  |||  |||||| |||||||||||    
T  35211244 gtgataccacccatatgtgcaggtgatgtgcatgctcttagt 35211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 39375604 - 39375508
Alignment:
Q  114 ctcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttagtg 210  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||||    
T  39375604 ctcaattccaaagccaattatccatgatattatgacacaagagtattggttagtatgataccacccatatggacaggcaatgtgtatgctcttagtg 39375508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 39375670 - 39375627
Alignment:
Q  12 tatactattaattaaaagaaataaaactcaaagtattacaaaat 55  Q
    |||| ||||||||||||||||||||||| |||||||||||||||    
T  39375670 tatattattaattaaaagaaataaaacttaaagtattacaaaat 39375627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 52314493 - 52314651
Alignment:
Q  49 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatga 148  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  52314493 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 52314592  T
Q  149 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctctta 207  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||||    
T  52314593 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctctta 52314651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 205
Target Start/End: Original strand, 53464903 - 53465059
Alignment:
Q  49 acaaaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatga 148  Q
    ||||||||  |||||| | |||||||||| ||||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||  ||||| ||||||    
T  53464903 acaaaatcagacaattgcaggaaaaggaaggtagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattattcatgatcttatga 53465002  T
Q  149 cacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 205  Q
    ||| | ||||||||  | ||||||||||||||||||  ||| ||||||| |||||||    
T  53465003 cacaaaagcattgggcaatgtgataccacccatatgtgcaggcgatgtgcatgctct 53465059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 23563558 - 23563714
Alignment:
Q  52 aaatctaacaattactggaaaaggaacgtagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatgacac 151  Q
    |||||| |||||| | |||||||||| ||||||||||||| | |||| | ||||||||||||||||||| ||| | |||||||| ||||| |||||||||    
T  23563558 aaatctgacaattgcaggaaaaggaaggtagtaatgcattaccaccatggatagtttaactactcaatttcaatgtcaattatccatgatcttatgacac 23563657  T
Q  152 gagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctcttag 208  Q
     | ||||||||  |||||||||||||||||||   ||| ||||||| ||||||||||    
T  23563658 aaaagcattgggcagtgtgataccacccatatatgcagccgatgtgcatgctcttag 23563714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 48265287 - 48265415
Alignment:
Q  80 tagtaatgcattgctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccaccc 179  Q
    |||||||||||| |||||| | ||||||||||||||||||| ||| |||||||||| ||||| ||||||||| | ||||||||  |||||||||||||||    
T  48265287 tagtaatgcattactaccatggatagtttaactactcaatttcaatgccaattatccatgatcttatgacacaaaagcattggacagtgtgataccaccc 48265386  T
Q  180 atatggacagacgatgtgtatgctcttag 208  Q
    |||||  ||| ||||||| ||| ||||||    
T  48265387 atatgtgcaggcgatgtgcatgttcttag 48265415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 40278604 - 40278487
Alignment:
Q  93 ctaccaggtatagtttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacg 192  Q
    |||||| | ||||||||||||||||||| ||| | |||||||| ||||| ||||||||| | ||||||||  ||||||||||||||||||||  ||| ||    
T  40278604 ctaccatggatagtttaactactcaatttcaatgtcaattatccatgattttatgacacaaaagcattggccagtgtgataccacccatatgtgcaggcg 40278505  T
Q  193 atgtgtatgctcttagtg 210  Q
    ||||||||||||| ||||    
T  40278504 atgtgtatgctctaagtg 40278487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 45888843 - 45888944
Alignment:
Q  106 tttaactactcaattccaaagccaattatctatgatattatgacacgagagcattggttagtgtgataccacccatatggacagacgatgtgtatgctct 205  Q
    |||| |||||||  ||||| |||||||||| | | || |||||||| | ||||||||||| |||  ||||||| || | ||| |||||||||||||||||    
T  45888843 tttagctactcatatccaatgccaattatccaagttactatgacacaaaagcattggttaatgtattaccacctattttgaccgacgatgtgtatgctct 45888942  T
Q  206 ta 207  Q
    ||    
T  45888943 ta 45888944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University