View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_496 (Length: 225)

Name: NF10855A_low_496
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_496
NF10855A_low_496
[»] chr3 (3 HSPs)
chr3 (33-132)||(26130580-26130679)
chr3 (33-131)||(23602813-23602911)
chr3 (47-122)||(8594821-8594896)
[»] chr4 (5 HSPs)
chr4 (33-132)||(22340129-22340228)
chr4 (33-132)||(29124011-29124110)
chr4 (47-131)||(15706134-15706217)
chr4 (164-216)||(17839027-17839079)
chr4 (156-216)||(22340248-22340308)
[»] chr7 (1 HSPs)
chr7 (33-92)||(22542872-22542931)
[»] chr1 (1 HSPs)
chr1 (47-132)||(49369337-49369422)


Alignment Details
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 26130679 - 26130580
Alignment:
Q  33 aagaaactaagaataatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggctag 132  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  26130679 aagaaactaagaaaaatatattaaaacacaaacagtccctcaaagcacaaggcgtgccaaaagggactgaaagcagttagttacaatacagaaaggctag 26130580  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 23602813 - 23602911
Alignment:
Q  33 aagaaactaagaataatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggcta 131  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||    
T  23602813 aagaaactaagaataatatattaaaacacaaacagttcctcaaagcacaaggtgtgccaaaagggactgaaaacagttagttacaatacggaaaggcta 23602911  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 8594821 - 8594896
Alignment:
Q  47 aatatattaaaa-cacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtaca 122  Q
    |||||||||||| ||||||| ||||||||| |||||||| ||| |||||| | || |||| ||||||||||| ||||    
T  8594821 aatatattaaaaacacaaacagtccctcaa-gcacaaggtgtgtcaaaagagcctaaaaatagttagttacaataca 8594896  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 132
Target Start/End: Original strand, 22340129 - 22340228
Alignment:
Q  33 aagaaactaagaataatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggctag 132  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||    
T  22340129 aagaaactaagaataatatattaaaacgcaaacagtccctcaaagcacaaggtgtgtcaaaagggactgaaaacagttagttacaatacagtaaggctag 22340228  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 29124110 - 29124011
Alignment:
Q  33 aagaaactaagaataatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggctag 132  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  29124110 aagaaattaagaataatatattaaaacacaaacagtccctcaaagcataaggtgtgccaaaaggaactgaaaacagttagttacaatacagtaaggctag 29124011  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 47 - 131
Target Start/End: Complemental strand, 15706217 - 15706134
Alignment:
Q  47 aatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggcta 131  Q
    |||||||||||| ||| |||||||||||| | |||||| ||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  15706217 aatatattaaaatacatacggtccctcaa-gtacaaggtgtgccaaaaggaactgaaaatagttagttacaatacagtaaggcta 15706134  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 17839079 - 17839027
Alignment:
Q  164 gacattacatggcaatctgtaaacaacttacggaattttgtctccaaacggga 216  Q
    ||||||||| |||| |||||||||||| || || |||||||||||||| ||||    
T  17839079 gacattacaaggcagtctgtaaacaacataagggattttgtctccaaaaggga 17839027  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 22340248 - 22340308
Alignment:
Q  156 caacaacggacattacatggcaatctgtaaacaacttacggaattttgtctccaaacggga 216  Q
    |||||||  ||||||||||||| |||||||||||| ||  | |||||||||||||| ||||    
T  22340248 caacaacatacattacatggcagtctgtaaacaacataaaggattttgtctccaaaaggga 22340308  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 22542872 - 22542931
Alignment:
Q  33 aagaaactaagaataatatattaaaacacaaacggtccctcaaagcacaaggcgtgccaa 92  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22542872 aagaaactaagaataatatattaaaacacaaacagtccctcaaagcacaaggtgtgccaa 22542931  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 132
Target Start/End: Original strand, 49369337 - 49369422
Alignment:
Q  47 aatatattaaaa-cacaaacggtccctcaaagcacaaggcgtgccaaaagggactgaaaacagttagttacagtacagaaaggctag 132  Q
    |||||||||||| |||| || |||||| || ||| |||| ||||||||||  |||||||| ||||||||||| ||||| ||||||||    
T  49369337 aatatattaaaaacacatacagtcccttaa-gcataaggtgtgccaaaagaaactgaaaatagttagttacaatacagtaaggctag 49369422  T

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