View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_5 (Length: 565)
Name: NF10855A_low_5
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 31 - 518
Target Start/End: Original strand, 49084584 - 49085071
Alignment:
| Q |
31 |
catttcaaatgaacattacagaatttccgacgttacttttaataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttccaaca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49084584 |
catttcaaatgaacattacagaatttccgacgttacttataataaaattcccatttgcaggtatggcagcagtatggtgttgcagcctttatttccaaca |
49084683 |
T |
|
| Q |
131 |
aagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggnnnnnnncaaaagcaggaaaatatcacatatctggtga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49084684 |
aagagttctcatgaatcacaaaaattatctgaaaatataaacactactcatcattatgatggaaaaaaacaaaagcaggaaaatatcacatatctggtga |
49084783 |
T |
|
| Q |
231 |
ttggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgacaataagtctatggaacatgataacgtttt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
49084784 |
ttggtcagtctgggcaagttgatacaaaatgtcaacttgaattctttccagccacaggggccacttccgataataagtctatggaacataataacgtttt |
49084883 |
T |
|
| Q |
331 |
acattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttcctcc |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49084884 |
acattctatgttcaacgcacaatcagggatgcatcccacttggacaccaaaatcagtgttccaaaaagagagttctccatttcccacaagtatttcctcc |
49084983 |
T |
|
| Q |
431 |
cattccaatcctaaaagtcagaactcagaacctcatcactggtcggatgatgccacctatacttgtgatcaaagcaataatgattttg |
518 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49084984 |
cattccaatcctaaaagccagaactcagaacctcatcactggtcggatgatgccacctatacttgtgatcaaagcaataatgattttg |
49085071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University