View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_50 (Length: 415)

Name: NF10855A_low_50
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_50
NF10855A_low_50
[»] chr6 (3 HSPs)
chr6 (7-400)||(663602-664000)
chr6 (168-396)||(908100-908328)
chr6 (170-214)||(10157995-10158039)
[»] chr7 (4 HSPs)
chr7 (63-126)||(44172881-44172944)
chr7 (59-133)||(36314611-36314685)
chr7 (43-109)||(38134414-38134480)
chr7 (169-217)||(36314628-36314676)
[»] chr2 (1 HSPs)
chr2 (169-220)||(44605137-44605188)
[»] chr5 (2 HSPs)
chr5 (47-120)||(16315862-16315935)
chr5 (72-120)||(19625928-19625976)
[»] chr3 (1 HSPs)
chr3 (58-126)||(8039206-8039274)
[»] chr4 (2 HSPs)
chr4 (58-120)||(18513238-18513300)
chr4 (50-99)||(5654609-5654658)
[»] chr8 (1 HSPs)
chr8 (44-109)||(6501481-6501546)
[»] chr1 (2 HSPs)
chr1 (49-126)||(43328458-43328535)
chr1 (172-220)||(40158408-40158456)


Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 400
Target Start/End: Complemental strand, 664000 - 663602
Alignment:
Q  7 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  664000 taattagatttgaagtatgaacacctgatacaatatggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatg 663901  T
Q  107 tgttagtgttgtgtt-----agtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 201  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663900 tgttagtgttgtgttgtgttagtgttagacacacctttgattagaagtgtcgattctaacaccatttataatttgagaaaaagacatatttcaatgaaat 663801  T
Q  202 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattttatatacgaacagttttta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||    
T  663800 tacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttggtgctacaaagattatatatatgaacaattttta 663701  T
Q  302 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  663700 tggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaatggagttcgcataataatgcagtttttgatgtc 663602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 168 - 396
Target Start/End: Original strand, 908100 - 908328
Alignment:
Q  168 tataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttagatacttacatgcattgtacacttggcacacctttgataagaagtgttg 267  Q
    |||||||||||||| || |||||||||||| | |||||| ||||||||||||| ||||||||| || | ||||||||||||||||||||||| |||||||    
T  908100 tataatttgagaaatagtcatatttcaatgtacttacatttgtcggtgttagacacttacatgtatcggacacttggcacacctttgataagtagtgttg 908199  T
Q  268 gtgctacaaagattttatatacgaacagtttttatggtttatgatttgcttatgtgaaattttgcctcttttgatatcagaggaagcgaggatttgtgaa 367  Q
    |||||||||||||| ||||||  ||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  908200 gtgctacaaagattatatatatcaacaaattttatggtttatgatttacttatgtgaaattttgcctcttttgataccagagaaagcgagaatttgtgaa 908299  T
Q  368 tggagttcgcataataatgcagtttttga 396  Q
    ||||||| |||||||||||||||||||||    
T  908300 tggagtttgcataataatgcagtttttga 908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 10157995 - 10158039
Alignment:
Q  170 taatttgagaaaaagacatatttcaatgaaattacatgtgtcggt 214  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  63 tgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    |||| |||||||||||| ||| |||| |||||||||| |||||||||| |||||||||| ||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 36314685 - 36314611
Alignment:
Q  59 acactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgttagacac 133  Q
    ||||| || |||||||||||| ||| ||||||||||||||| || ||||||| ||||||| || ||||| |||||    
T  36314685 acactcataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgttgtcttggtgttggacac 36314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 38134480 - 38134414
Alignment:
Q  43 ggacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 109  Q
    |||||| ||||||||||||| ||| |||||||||||| ||| |||| |||||||||| || ||||||    
T  38134480 ggacatggacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 36314676 - 36314628
Alignment:
Q  169 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgtt 217  Q
    |||||||||||||| |||||||||||||| ||| | |||||| ||||||    
T  36314676 ataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgtt 36314628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 44605188 - 44605137
Alignment:
Q  169 ataatttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 220  Q
    ||||||||||||||  ||||| ||||||| ||||||||||||||||||||||    
T  44605188 ataatttgagaaaataacataattcaatgtaattacatgtgtcggtgttaga 44605137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 16315862 - 16315935
Alignment:
Q  47 attgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    |||||||||||||||||||| |||||||||| | |||  ||| || ||||||||||||||| |  |||||||||    
T  16315862 attgacatgttgacactgataataatttgaggaaatgatataattgaatgtaaccacatgtatctgtgttgtgt 16315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 19625976 - 19625928
Alignment:
Q  72 tttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    |||||||| |||| ||| || ||||||||||||||||| ||||||||||    
T  19625976 tttgagaaaatggaataattgaatgtaaccacatgtgtcagtgttgtgt 19625928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 8039206 - 8039274
Alignment:
Q  58 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    |||||||||||||||||||||| |||||||  |||||||||| || | ||||  ||||||||| |||||    
T  8039206 gacactgatgataatttgagaaaatggcatgattcaatgtaatcataggtgtcggtgttgtgtcagtgt 8039274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 18513300 - 18513238
Alignment:
Q  58 gacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgt 120  Q
    ||||| ||| |||||||||||| ||| |||| |||||||||| || |||||| ||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 5654658 - 5654609
Alignment:
Q  50 gacatgttgacactgatgataatttgagaacatggcatatttcaatgtaa 99  Q
    ||||||| ||||||||| |||||||||||| ||| |||| ||||||||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaa 5654609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 6501481 - 6501546
Alignment:
Q  44 gacattgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgt 109  Q
    |||||||||| |||||||||| | |||||||||||  |||  ||| || |||||||||||||||||    
T  6501481 gacattgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 43328458 - 43328535
Alignment:
Q  49 tgacatgttgacactgatgataatttgagaacatggcatatttcaatgtaaccacatgtgttagtgttgtgttagtgt 126  Q
    ||||| ||||||||| || |||||||||||| |||  ||| || ||||||||||||||||| | ||| ||||| ||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 40158456 - 40158408
Alignment:
Q  172 atttgagaaaaagacatatttcaatgaaattacatgtgtcggtgttaga 220  Q
    ||||||||||| ||||||  | |||||||| ||||||||||||||||||    
T  40158456 atttgagaaaatgacataaatgaatgaaatcacatgtgtcggtgttaga 40158408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University