View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_500 (Length: 224)
Name: NF10855A_low_500
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_500 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 18446573 - 18446361
Alignment:
| Q |
12 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgaatatgtcaatccctatacatctt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
18446573 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggctttgtgtgatatgattctgtcaatccctatacatctt |
18446474 |
T |
|
| Q |
112 |
ctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatatttat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18446473 |
ctcttcacttggaactctctatggtcattttaagcattaagttgaattgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatatttat |
18446374 |
T |
|
| Q |
212 |
ttgtgaatggtga |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18446373 |
ttgtgaatggtga |
18446361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 36404338 - 36404125
Alignment:
| Q |
12 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
36404338 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctatgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
36404239 |
T |
|
| Q |
111 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatattta |
210 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404238 |
tctctccacttggaactccctatggtcattttaagcattaagttgaacagtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattta |
36404139 |
T |
|
| Q |
211 |
tttgtgaatggtga |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
36404138 |
tttgtgaatggtga |
36404125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 55353290 - 55353503
Alignment:
| Q |
12 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttt-gtgtgatatgaatatgtcaatccctatacatct |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| |
|
|
| T |
55353290 |
atgaataggcagaggaagaagacttttgtaatgacgtaagttgctcaatctgtgcgatgaggcttttgtgtgatatgattctgtcaatccctatacatct |
55353389 |
T |
|
| Q |
111 |
tctcttcacttggaactctctatggtcattttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatattta |
210 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
55353390 |
tctcttcatttgaaactccctatggtcattttaagcattaagttgaactgtatttggtaaaaaaattatattgttcaagaccggagggagtgcatattta |
55353489 |
T |
|
| Q |
211 |
tttgtgaatggtga |
224 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
55353490 |
tttgtgaatggtga |
55353503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 29607643 - 29607428
Alignment:
| Q |
12 |
atgaataggcagaggaagaggacttttgtaatgacgtaagttgctcaatctgtgcgatgaggc-tttgtgtgatatgaatatgtcaatccctatacatct |
110 |
Q |
| |
|
|||||| | ||||||||||||||| |||||||||||||||||||||||| | ||||| | | ||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
29607643 |
atgaatggacagaggaagaggactgttgtaatgacgtaagttgctcaatttaagcgatacgacttttgtttgatatgattctgtcaatccctatacatct |
29607544 |
T |
|
| Q |
111 |
tctcttcacttggaactctctatggtca---ttttaagcattaagttgaactgtatttggtaaaaaatttatattgttcaagaccggagggagtgcatat |
207 |
Q |
| |
|
||| ||||||||||||| || |||||| ||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||||| |||| |
|
|
| T |
29607543 |
gctcatcacttggaactccctgtggtcaattttttaagca-aaagttgaactgtatttgctcaaaaatttatattattcaagacccaagggagtaaatat |
29607445 |
T |
|
| Q |
208 |
ttatttgtgaatggtga |
224 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
29607444 |
tattttgtgaatggtga |
29607428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University