View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_501 (Length: 224)

Name: NF10855A_low_501
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_501
NF10855A_low_501
[»] chr4 (3 HSPs)
chr4 (27-210)||(59305-59488)
chr4 (131-183)||(47970000-47970052)
chr4 (138-191)||(27987511-27987564)
[»] chr2 (4 HSPs)
chr2 (101-183)||(41538948-41539030)
chr2 (105-182)||(1968104-1968181)
chr2 (37-120)||(34337984-34338067)
chr2 (111-190)||(10677364-10677442)
[»] chr5 (3 HSPs)
chr5 (73-183)||(31682830-31682939)
chr5 (90-183)||(7553464-7553557)
chr5 (77-181)||(42930631-42930733)
[»] chr1 (1 HSPs)
chr1 (73-127)||(18186787-18186841)
[»] chr3 (1 HSPs)
chr3 (146-191)||(28455894-28455939)
[»] scaffold0432 (1 HSPs)
scaffold0432 (134-178)||(1765-1809)
[»] chr7 (1 HSPs)
chr7 (52-120)||(3119735-3119803)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 59488 - 59305
Alignment:
Q  27 aatatcctttgtgcgcaactgcggagactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcacc 126  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  59488 aatatcctttgtgcgcaactgcggagactaatcccttcaaggtaactgagatccatttatgaggttgatcttttccaacaaatatttttccatatgcacc 59389  T
Q  127 ggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacactttcctttaaaatttgatgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  59388 ggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacactttcctttaaaatttgatgt 59305  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 47970052 - 47970000
Alignment:
Q  131 agagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 183  Q
    ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  47970052 agagatcgaactctggaccaaatggttgagggactcaactatctaccacttgt 47970000  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 27987511 - 27987564
Alignment:
Q  138 gaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacact 191  Q
    |||| ||||| ||||||||||||  |||||| |||||||||||||| |||||||    
T  27987511 gaactctggaacaaatggttaagaaactcaactatctaccacttgtgccacact 27987564  T

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Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 41539030 - 41538948
Alignment:
Q  101 ccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 183  Q
    ||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| |||||||    
T  41539030 ccaacaaatatttttccctacgcaccggccagggatcgaaccctggaccgaatggttaagagacccaagtatctagcacttgt 41538948  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 1968181 - 1968104
Alignment:
Q  105 caaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttg 182  Q
    ||||| |||||||||||||||||||||| ||||||||||  |||||||||||||| |||| |||||||||||||||||    
T  1968181 caaatgtttttccatatgcaccggccagggatcgaaccccagaccaaatggttaatggacccaagtatctaccacttg 1968104  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 34337984 - 34338067
Alignment:
Q  37 gtgcgcaactgcggagactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccata 120  Q
    ||||||||||| ||||||||  ||| ||||||||||||||||| ||||| | |||||| || | ||||||||| ||||||||||    
T  34337984 gtgcgcaactgtggagactaaccccctcaaggtaactgagatccatttaaggggttgacctatcccaacaaatgtttttccata 34338067  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 10677364 - 10677442
Alignment:
Q  111 tttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgttccacac 190  Q
    |||||||||| |||  || ||| ||| ||||| ||||||||||||||||||| |||||| ||||||||||||| ||||||    
T  10677364 tttttccatacgcattgggcagggatggaaccatggaccaaatggttaaggg-ctcaagcatctaccacttgtgccacac 10677442  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 31682939 - 31682830
Alignment:
Q  73 tgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtat 172  Q
    ||||||| ||||| |||||| | || ||||||||||| |||||| ||| |||| || |||| ||| |||||| ||||||||||||||||   || |||||    
T  31682939 tgagatccatttaagaggttcacctcttccaacaaatgtttttc-atacgcacaggtcagaaatcaaaccctagaccaaatggttaaggtgttcgagtat 31682841  T
Q  173 ctaccacttgt 183  Q
    |||||||||||    
T  31682840 ctaccacttgt 31682830  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 7553464 - 7553557
Alignment:
Q  90 gttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctaccacttgt 183  Q
    ||||| ||||| |||||||| ||||||||||| |||||  || | ||| |||  |||| |||||||||||||||  |||||||||| |||||||    
T  7553464 gttgacctttttcaacaaatgtttttccatatacaccgatcaaaaatcaaacaatggatcaaatggttaagggatccaagtatctatcacttgt 7553557  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 42930733 - 42930631
Alignment:
Q  77 atctatttatgaggttgatcttttccaacaaatatttttccatatgcaccggccagagatcgaaccctggaccaaatggttaagggactcaagtatctac 176  Q
    ||||||||| |||| ||||||||  |||||||| ||||| |||| ||| || | ||  |||||| |||| | |||||||||||| ||||||| ||||||     
T  42930733 atctatttaagaggatgatcttt--caacaaatgttttttcatacgcatcgactaggaatcgaatcctgaatcaaatggttaagagactcaaatatctat 42930636  T
Q  177 cactt 181  Q
    |||||    
T  42930635 cactt 42930631  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 18186787 - 18186841
Alignment:
Q  73 tgagatctatttatgaggttgatcttttccaacaaatatttttccatatgcaccg 127  Q
    |||||| ||||||  || ||||| ||||||||||||||||||| |||||||||||    
T  18186787 tgagatttatttaaaagattgattttttccaacaaatatttttgcatatgcaccg 18186841  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 28455894 - 28455939
Alignment:
Q  146 gaccaaatggttaagggactcaagtatctaccacttgttccacact 191  Q
    ||||||||| |||||||| ||||||||||| ||||||| |||||||    
T  28455894 gaccaaatgattaagggattcaagtatctatcacttgtgccacact 28455939  T

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Target: scaffold0432 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 1765 - 1809
Alignment:
Q  134 gatcgaaccctggaccaaatggttaagggactcaagtatctacca 178  Q
    ||||||||||| |||||||||||||||| |  |||||||||||||    
T  1765 gatcgaaccctagaccaaatggttaaggcatacaagtatctacca 1809  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 3119735 - 3119803
Alignment:
Q  52 gactagtcccttcaaggtaactgagatctatttatgaggttgatcttttccaacaaatatttttccata 120  Q
    ||||| |||| ||||||||||| ||||| ||||| | |||||| || || |||||||| ||||||||||    
T  3119735 gactaatcccctcaaggtaactaagatccatttaaggggttgacctctttcaacaaatgtttttccata 3119803  T

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