View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_502 (Length: 224)
Name: NF10855A_low_502
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_502 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 11336209 - 11336381
Alignment:
| Q |
12 |
gaagcgacgagtaattcaagaagaatcaaaccatgctcttgataccgtgtaaacaacacaaatatacgagttcatctttcttccattcaggaagcctcca |
111 |
Q |
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| T |
11336209 |
gaagcgacgagtaatttaagaagaatcaaaccatgctcttgataccatgtaaacaacacaaatacacgagttcatctttcttccatttaggaagcctcca |
11336308 |
T |
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| Q |
112 |
tttttcccggcccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
184 |
Q |
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| T |
11336309 |
ttttccccggtccagcttttaggtgtgtgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
11336381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 43379553 - 43379448
Alignment:
| Q |
79 |
gagttcatctttcttccattcaggaagcctccatttttcccggcccagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa |
178 |
Q |
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| T |
43379553 |
gagttcatctttgctccatttatgaaggctccatttatcccattccagctcttagatgtgtgacatgtggcaaaaataaaagcaagggttgggattaaaa |
43379454 |
T |
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| Q |
179 |
ggtttg |
184 |
Q |
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|||||| |
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| T |
43379453 |
ggtttg |
43379448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 43378623 - 43378677
Alignment:
| Q |
130 |
ttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
184 |
Q |
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| T |
43378623 |
ttagatgtgtgacacgtggcaaaaataaaagcaagggttgagattaaaaggtttg |
43378677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 13208264 - 13208225
Alignment:
| Q |
145 |
gtgacaaacataaaagcaagggttaggattaaaaggtttg |
184 |
Q |
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| T |
13208264 |
gtgacaaaaataaaagcaagggttgggattaaaaggtttg |
13208225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 3163534 - 3163592
Alignment:
| Q |
124 |
cagtttttagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtt |
182 |
Q |
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| T |
3163534 |
cagtttatagatgtgcgacatgtgtcaaaaataaaaccaagggttaggatcaaaaggtt |
3163592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 3466658 - 3466705
Alignment:
| Q |
131 |
tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaa |
178 |
Q |
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| T |
3466658 |
tagatgtgtgacatatgacaaaaataaaatcaagggttaggattaaaa |
3466705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 39062916 - 39062863
Alignment:
| Q |
131 |
tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
184 |
Q |
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||||||||||||||||| ||| |||||| ||| || ||||||||||||||||| |
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| T |
39062916 |
tagatgtatgacatgtggcaacaataaaatcaatggctaggattaaaaggtttg |
39062863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 35752377 - 35752430
Alignment:
| Q |
131 |
tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaaggtttg |
184 |
Q |
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||||||||||||||||| |||| |||||| ||| |||| |||||||||||||| |
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| T |
35752377 |
tagatgtatgacatgtggcaaaaataaaatcaatggttgtgattaaaaggtttg |
35752430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 46294693 - 46294741
Alignment:
| Q |
131 |
tagatgtatgacatgtgacaaacataaaagcaagggttaggattaaaag |
179 |
Q |
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||||||| |||||| |||||| |||||| ||||||||||||||||||| |
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| T |
46294693 |
tagatgtgtgacatatgacaataataaaatcaagggttaggattaaaag |
46294741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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