View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_506 (Length: 223)
Name: NF10855A_low_506
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_506 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 11565686 - 11565499
Alignment:
| Q |
18 |
gacatgaacgacggaaatggcgcagattgtggtgggttatggggaacagaggattaactgcgttgtggtagttcgggttcgtcgaagaagttgtgtttca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11565686 |
gacatgaacgacggaaatggcgcagattgtggtgagtaatggggaacagaggattaactgcgttgtggtagttcgggttcgtcgaagaagttgtgtttca |
11565587 |
T |
|
| Q |
118 |
cgtgaatggatagataataggtattgataactgattgagtaaagaagaaacaagtgtttaattccaacaatttgtagtgcacttgcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11565586 |
cgtgaatggatagataataggtattgataactgattgagtaaagaagaaacaagtgtttaattccaacaatttgtagtgcacttgcat |
11565499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University