View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_508 (Length: 222)
Name: NF10855A_low_508
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_508 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 11527321 - 11527525
Alignment:
| Q |
18 |
caatattataaccagggcactgtatattgaaacttaaaagaactgtttctctttcaaatttgcagacacgcgtccacatatttcgttcctacattataca |
117 |
Q |
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| T |
11527321 |
caatattataaccagggcactgtatattgaaacttgaaagaactgtttctctttcaaatttgcagacacgcatccacatatttcgttcctacattataca |
11527420 |
T |
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| Q |
118 |
tgtataaaataaagcatcaatcaagtattacaaaaaatgcttgcaatgtcttgcgatgcaaaatctatgaggtgcaaattcaaattgagaaagaacagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11527421 |
tgtataaaataaagcatcaatcaagtattacaaaaaatgcttgcaatgtcttgcgatgcaaaatctatgaggtgcaaattcaaattgagaaagaacagaa |
11527520 |
T |
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| Q |
218 |
gaaaa |
222 |
Q |
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||||| |
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| T |
11527521 |
gaaaa |
11527525 |
T |
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