View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_51 (Length: 415)
Name: NF10855A_low_51
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_51 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 29013376 - 29013767
Alignment:
| Q |
18 |
acatcaacaaatccacctggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013376 |
acatcaacaaatccacttggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
29013475 |
T |
|
| Q |
118 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagttactctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013476 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
29013575 |
T |
|
| Q |
218 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
317 |
Q |
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| T |
29013576 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
29013675 |
T |
|
| Q |
318 |
ttggttggatcaacccaaccaatagcataccagtgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
409 |
Q |
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| T |
29013676 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 29366064 - 29366455
Alignment:
| Q |
18 |
acatcaacaaatccacctggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366064 |
acatcaacaaatccacttggtttaccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaacc |
29366163 |
T |
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| Q |
118 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagttactctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366164 |
ctttagcaagaaactctttgagaagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaag |
29366263 |
T |
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| Q |
218 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366264 |
atcatgaaaatttggatcagagttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttg |
29366363 |
T |
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| Q |
318 |
ttggttggatcaacccaaccaatagcataccagtgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
409 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29366364 |
ttggttggatcaacccaaccaatagcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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