View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_512 (Length: 221)
Name: NF10855A_low_512
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_512 |
 | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 46844717 - 46844530
Alignment:
| Q |
13 |
ctccaataatatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattca |
112 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46844717 |
ctccaacaacatcctctggtcacggcattcatggctgcaaaatgccatctcacccctgcaatgcaataatgcaactaggttcaagatctcatggtattca |
46844618 |
T |
|
| Q |
113 |
ctatcattccttcaaggaatcgttctaattctaatcggacacaaattagcaaatcatactttcctttgatgtaataagacagacacgg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46844617 |
ctatcattccttcaaggaatcggtctaattctaatcggacacaaattagcaaattatactttcctttgatgtaataagacagacacgg |
46844530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 48942 - 48986
Alignment:
| Q |
24 |
tcctctggtcacggcattcatggctgcaaaatgccatctcacccc |
68 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||| |
|
|
| T |
48942 |
tcctctggttacggcattcagggttgcaaaatgccatctcacccc |
48986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University