View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_514 (Length: 221)
Name: NF10855A_low_514
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_514 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 204
Target Start/End: Complemental strand, 3686449 - 3686306
Alignment:
| Q |
68 |
ttcttcttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtactatatatggtttatgccat------ |
161 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
3686449 |
ttctttttcattgtatcatcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgttagtattatatatggtttatgccttttgttc |
3686350 |
T |
|
| Q |
162 |
atatcatc-gtttcatgtctatcttattattatcatcgtttcat |
204 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686349 |
attacatctgtttcatgtctatcttattattatcatcgtttcat |
3686306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 3687028 - 3687100
Alignment:
| Q |
82 |
atcatcatttgaaagggatcttgtgcttttgttttct-aaattgttcttactatgttagtactatatatggtttat |
156 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3687028 |
atcatcatttgaaagggatcatgtgcttttcttttttaaaattgttcttactatgttag---tatatatggtttat |
3687100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 51
Target Start/End: Complemental strand, 3686502 - 3686472
Alignment:
| Q |
21 |
agggggatagcaagatcgtaaaacaaagttg |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3686502 |
agggggatagcaagatcgtaaaacaaagttg |
3686472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 41979749 - 41979687
Alignment:
| Q |
81 |
tatcatcatttgaa---agggatcttgtgcttttgttttctaaattgttcttactatgttagt |
140 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
41979749 |
tatcatcatttgaatgaagggatcaggtgcatttgtttattaaattgttcttactatgttagt |
41979687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 4432462 - 4432410
Alignment:
| Q |
85 |
atcatttgaaagggatcttgtgcttttgttttctaaattgttcttactatgtt |
137 |
Q |
| |
|
|||||||||| |||||| |||| || | |||||||||||||||||||||||| |
|
|
| T |
4432462 |
atcatttgaaggggatcatgtgaattggctttctaaattgttcttactatgtt |
4432410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University