View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_516 (Length: 221)
Name: NF10855A_low_516
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_516 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 5083816 - 5084018
Alignment:
| Q |
9 |
tctccaacaatatcattgtagctcgaattcaacaactttaatctcttcaactgaagtaactcaagtggtaactcaccatgaaaactattgccatgtagat |
108 |
Q |
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| T |
5083816 |
tctccaacaaaatcattgttgctcaaattcaacaatttcaatctcttcaactgaagtaactcatgtggtaactcaccatggaaactatttccttgtagat |
5083915 |
T |
|
| Q |
109 |
caagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaagattcaatgcatttactcttccatgatgtcc |
208 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5083916 |
caagaaatacaaggaaagagagatttcccaattgaggggaaattgtaccttcaaggtccatgttactaagattcaatgcatttactcttccatgatgttc |
5084015 |
T |
|
| Q |
209 |
atc |
211 |
Q |
| |
|
||| |
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|
| T |
5084016 |
atc |
5084018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 5094252 - 5094050
Alignment:
| Q |
9 |
tctccaacaatatcattgtagctcgaattcaacaactttaatctcttcaactgaagtaactcaagtggtaactcaccatgaaaactattgccatgtagat |
108 |
Q |
| |
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|||||||||| |||||||| ||| |||||||||| || ||||| ||||||||||| |||||| |||||||||||||||| ||||||||||| |||| || |
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| T |
5094252 |
tctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactgaagcaactcatgtggtaactcaccatggaaactattgccctgtaaat |
5094153 |
T |
|
| Q |
109 |
caagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaagattcaatgcatttactcttccatgatgtcc |
208 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||| ||| | |
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| T |
5094152 |
caagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaagattcaatgcatttactcttccatggtgttc |
5094053 |
T |
|
| Q |
209 |
atc |
211 |
Q |
| |
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||| |
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|
| T |
5094052 |
atc |
5094050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 211
Target Start/End: Complemental strand, 5111255 - 5111053
Alignment:
| Q |
9 |
tctccaacaatatcattgtagctcgaattcaacaactttaatctcttcaactgaagtaactcaagtggtaactcaccatgaaaactattgccatgtagat |
108 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||| | || |||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| || |
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| T |
5111255 |
tctccaacaaaatcattgtcactcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaat |
5111156 |
T |
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| Q |
109 |
caagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaagattcaatgcatttactcttccatgatgtcc |
208 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||| |||||| |||| |||||||| |||||| ||||||||| ||||||||||||||| | |
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| T |
5111155 |
caagaacaacaaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggtccatgttattaagatccaatgcattcactcttccatgatgttc |
5111056 |
T |
|
| Q |
209 |
atc |
211 |
Q |
| |
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||| |
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| T |
5111055 |
atc |
5111053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 14427595 - 14427800
Alignment:
| Q |
9 |
tctccaacaatatcattgtagctcgaattcaacaactttaatctctt---caactgaagtaactcaagtggtaactcaccatgaaaactattgccatgta |
105 |
Q |
| |
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|||||||||| |||||||| |||| ||| ||||| || ||||| || ||| |||| ||||||| |||||||||||||||| |||||||||||||||| |
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| T |
14427595 |
tctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgccatgta |
14427694 |
T |
|
| Q |
106 |
gatcaagaacagcaaggaaagagagatttcccaattgaggagaaatgatacctttaaggcccatgttactaagattcaatgcatttactcttccatgatg |
205 |
Q |
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| T |
14427695 |
gatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttccatgatg |
14427794 |
T |
|
| Q |
206 |
tccatc |
211 |
Q |
| |
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| |||| |
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|
| T |
14427795 |
ttcatc |
14427800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 16873461 - 16873377
Alignment:
| Q |
60 |
tgaagtaactcaagtggtaactcaccatgaaaactattgccatgtagatcaagaacagcaaggaaagagagatttcccaattgag |
144 |
Q |
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| T |
16873461 |
tgaagtaactcttgtggaaactcaccatggaaactattgccttgtaggtcaagaataacaaggaaagagagatttcccaattgag |
16873377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 16872553 - 16872502
Alignment:
| Q |
154 |
tacctttaaggcccatgttactaagattcaatgcatttactcttccatgatg |
205 |
Q |
| |
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| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatg |
16872502 |
T |
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