View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_519 (Length: 220)

Name: NF10855A_low_519
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_519
NF10855A_low_519
[»] chr4 (18 HSPs)
chr4 (6-212)||(49376681-49376883)
chr4 (31-106)||(48731185-48731260)
chr4 (29-106)||(9469828-9469905)
chr4 (31-106)||(36543834-36543909)
chr4 (25-106)||(50146930-50147011)
chr4 (23-106)||(36156306-36156389)
chr4 (29-106)||(12673040-12673117)
chr4 (29-106)||(40797881-40797958)
chr4 (29-106)||(46944556-46944633)
chr4 (23-106)||(34980516-34980599)
chr4 (23-106)||(51995123-51995206)
chr4 (64-106)||(12789564-12789606)
chr4 (64-106)||(21441667-21441709)
chr4 (64-106)||(45674921-45674963)
chr4 (29-106)||(80548-80625)
chr4 (29-106)||(11055238-11055315)
chr4 (64-105)||(44791256-44791297)
chr4 (60-104)||(32397712-32397756)
[»] chr5 (19 HSPs)
chr5 (29-106)||(38522873-38522950)
chr5 (23-106)||(3801376-3801459)
chr5 (29-106)||(31620919-31620996)
chr5 (32-106)||(32156958-32157032)
chr5 (29-106)||(27450593-27450670)
chr5 (61-106)||(31021946-31021991)
chr5 (23-106)||(20190597-20190679)
chr5 (29-106)||(27196128-27196205)
chr5 (66-106)||(15933251-15933291)
chr5 (23-106)||(14500718-14500801)
chr5 (23-106)||(20189018-20189101)
chr5 (35-106)||(29328100-29328171)
chr5 (23-106)||(41783370-41783453)
chr5 (28-106)||(10327980-10328058)
chr5 (64-106)||(18880278-18880320)
chr5 (64-106)||(27906184-27906226)
chr5 (29-106)||(26299898-26299975)
chr5 (29-106)||(32945033-32945110)
chr5 (29-106)||(39407457-39407534)
[»] chr7 (15 HSPs)
chr7 (23-106)||(7447926-7448009)
chr7 (35-106)||(20401058-20401129)
chr7 (26-106)||(3942229-3942309)
chr7 (29-106)||(26719871-26719948)
chr7 (29-106)||(33898956-33899033)
chr7 (29-106)||(43052928-43053005)
chr7 (29-105)||(49034237-49034313)
chr7 (35-106)||(665859-665930)
chr7 (35-106)||(5776142-5776213)
chr7 (60-106)||(21760595-21760641)
chr7 (64-106)||(36927090-36927132)
chr7 (32-106)||(45176304-45176378)
chr7 (29-106)||(18250005-18250082)
chr7 (29-106)||(18740230-18740307)
chr7 (29-106)||(37401578-37401655)
[»] chr3 (12 HSPs)
chr3 (23-106)||(39469543-39469626)
chr3 (23-104)||(39135399-39135480)
chr3 (23-106)||(46293225-46293308)
chr3 (61-106)||(19560786-19560831)
chr3 (23-106)||(54393455-54393538)
chr3 (29-106)||(12710753-12710830)
chr3 (29-106)||(33438743-33438820)
chr3 (29-104)||(40943612-40943687)
chr3 (64-106)||(32689255-32689297)
chr3 (52-106)||(54432189-54432243)
chr3 (66-106)||(25253790-25253830)
chr3 (66-106)||(30743660-30743700)
[»] scaffold0022 (1 HSPs)
scaffold0022 (29-106)||(124493-124570)
[»] chr1 (21 HSPs)
chr1 (23-106)||(15014360-15014443)
chr1 (23-106)||(25124897-25124980)
chr1 (23-106)||(35810763-35810846)
chr1 (29-106)||(28006401-28006478)
chr1 (29-106)||(40159642-40159719)
chr1 (23-106)||(7596438-7596521)
chr1 (23-106)||(14578597-14578680)
chr1 (23-106)||(20347711-20347794)
chr1 (35-106)||(24469829-24469900)
chr1 (23-106)||(24575954-24576037)
chr1 (23-106)||(42916126-42916209)
chr1 (35-106)||(47602874-47602945)
chr1 (64-106)||(7702921-7702963)
chr1 (60-106)||(23916892-23916938)
chr1 (64-106)||(32179944-32179986)
chr1 (64-106)||(36419187-36419229)
chr1 (60-106)||(47983337-47983383)
chr1 (29-106)||(15257183-15257260)
chr1 (29-106)||(15306544-15306621)
chr1 (29-106)||(29677531-29677608)
chr1 (29-106)||(31816619-31816696)
[»] chr6 (5 HSPs)
chr6 (23-106)||(5640264-5640347)
chr6 (29-106)||(13312073-13312152)
chr6 (35-106)||(8200688-8200759)
chr6 (29-106)||(3081730-3081807)
chr6 (29-106)||(10961808-10961885)
[»] chr8 (6 HSPs)
chr8 (29-106)||(39478101-39478178)
chr8 (23-106)||(33279989-33280072)
chr8 (23-106)||(34516183-34516266)
chr8 (29-106)||(43384845-43384922)
chr8 (64-106)||(453569-453611)
chr8 (29-106)||(27189094-27189171)
[»] chr2 (7 HSPs)
chr2 (23-106)||(30713201-30713284)
chr2 (23-108)||(27902449-27902534)
chr2 (23-106)||(11027953-11028036)
chr2 (29-104)||(20203728-20203803)
chr2 (35-106)||(33831552-33831623)
chr2 (64-106)||(27634757-27634799)
chr2 (29-106)||(27464584-27464661)
[»] scaffold0223 (1 HSPs)
scaffold0223 (29-106)||(14477-14554)
[»] scaffold0260 (1 HSPs)
scaffold0260 (23-106)||(10034-10117)
[»] scaffold0224 (1 HSPs)
scaffold0224 (23-106)||(7320-7403)
[»] scaffold0316 (1 HSPs)
scaffold0316 (64-106)||(19382-19424)
[»] scaffold0171 (1 HSPs)
scaffold0171 (32-106)||(21141-21215)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 6 - 212
Target Start/End: Complemental strand, 49376883 - 49376681
Alignment:
Q  6 acatatcattaagagccttcggttcatttggttcatgga-tcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 104  Q
    |||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  49376883 acatatcattaagagccttcggctcatttagttcatggaatcaagttcaatggaccaattgtcgagtcaaattacgaactatattcgatttggttcggtt 49376784  T
Q  105 caattcattatcagccctattattggcgcaagcatattttatttttcggttacaaagaagatcgaagcacaaggcataaagactttgttgagaataatat 204  Q
    |      || ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  49376783 cg-----ttgtcagccctactattggcgcaagcatattttatttttcgattacaaagaagatcgaagcgcaaggcataaagactttgttgagaataatat 49376689  T
Q  205 gtaaatat 212  Q
    ||||||||    
T  49376688 gtaaatat 49376681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 48731260 - 48731185
Alignment:
Q  31 atttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  48731260 atttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttca 48731185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 9469828 - 9469905
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9469828 tcatttggttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttca 9469905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 36543834 - 36543909
Alignment:
Q  31 atttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36543834 atttggttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttca 36543909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 50147011 - 50146930
Alignment:
Q  25 cggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||||||| | ||| ||||| | | ||||| |||| |||||||||||||| || |||| |||||||||||||    
T  50147011 cggttcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttca 50146930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 36156389 - 36156306
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||| | | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  36156389 ttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 36156306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 12673117 - 12673040
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  12673117 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 12673040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 40797881 - 40797958
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||||| |||||||||||| || | |  |||||||| || ||||||||||||||||    
T  40797881 tcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagtatcgaactatttttgagttggttcggttca 40797958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 46944633 - 46944556
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| |  ||||||||||| ||||||  |||||||| || ||||||||||||||||    
T  46944633 tcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggttcggttca 46944556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 34980599 - 34980516
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||| |||||||| |||||| ||||| ||||||| | |||||||||| |||| |  | |||||| |||||||||||| ||||||    
T  34980599 ttcgattcatttgattcatgaatcaagttcaatgaatcaattatcgaatcgagtctcaaactattttcgagttggtttggttca 34980516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 51995123 - 51995206
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||| | |  ||||||||| |||| |  |||||||| |||||||||||||||||||    
T  51995123 ttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcgagttggttcggttca 51995206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 12789606 - 12789564
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  12789606 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 12789564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 21441667 - 21441709
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  21441667 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 21441709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 45674921 - 45674963
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  45674921 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 45674963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 80548 - 80625
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | | |||||| ||| || |||| |||||||| |||||||||| ||||||||    
T  80548 tcatttggttcatgaaccaagttcaacgaaacaattaccgaatcaaatttcgaactattttcgagttggatcggttca 80625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 11055315 - 11055238
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| |||||||    ||||||||| |||| || ||||||||  ||||||||||||||||||    
T  11055315 tcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttca 11055238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 44791297 - 44791256
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttc 105  Q
    |||||||||||||  ||||||||| |||||||||||||||||    
T  44791297 tatcgagtcgaatgtcgaactataatcgagttggttcggttc 44791256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 32397756 - 32397712
Alignment:
Q  60 caattatcgagtcgaattacgaactatattcgagttggttcggtt 104  Q
    ||||| ||||||||||||||||||| || |||| |||||||||||    
T  32397756 caattgtcgagtcgaattacgaactttaatcgaattggttcggtt 32397712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 38522950 - 38522873
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38522950 tcatttggttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttca 38522873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 3801459 - 3801376
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3801459 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttca 3801376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 31620919 - 31620996
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||| | |||||||||||||| |||| |||||||||||| |||||||||||| |||||||||||||||    
T  31620919 tcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttca 31620996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 32157032 - 32156958
Alignment:
Q  32 tttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| ||||| | ||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  32157032 tttggctcatgaaacaagttcaatggaccaattgtcaagtcgaattacgaactatattcgaattggttcggttca 32156958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 27450670 - 27450593
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||| ||||||||||| | | |||||||||| ||||||  || ||||| |||||||||||||||||||    
T  27450670 tcattaggttcatgaatcaaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttca 27450593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 31021946 - 31021991
Alignment:
Q  61 aattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  31021946 aattatcgagtcgagttccgaactatattcgagttggttcggttca 31021991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 20190679 - 20190597
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| ||| | |||||||||| |||||||||||||| || | ||||||||||||||||    
T  20190679 ttcggctcatttggttcatgaaccaagttcgatgaatcaattatcgaatcgaattacgaact-taatagagttggttcggttca 20190597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 27196128 - 27196205
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | |||||| || | | |||||||||| |||| |  |||||||| |||||||||||||||||||    
T  27196128 tcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttca 27196205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 15933251 - 15933291
Alignment:
Q  66 tcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  15933251 tcgagtcgaatttcgaactatactcgagttggttcggttca 15933291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 14500801 - 14500718
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| || ||||||||||| | ||| ||||| | || |||||||||||||| || |||||| |||||||||||  ||||||||    
T  14500801 ttcggctcgtttggttcatgaaccaagttcaacgaactaattatcgagtcgagttccgaactgtattcgagttgtatcggttca 14500718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 20189018 - 20189101
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || |||||||| |||||||||    
T  20189018 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttgattcggttca 20189101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 29328100 - 29328171
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| ||||| ||||| |||  || |||||||||||||  ||||||||| ||||||| ||||||||||    
T  29328100 ggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagtttgttcggttca 29328171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 41783370 - 41783453
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||| | || ||||| |||||||| || |||||| |||||||||||  ||||||||    
T  41783370 ttcggctcatttggttcatgaaccaagttcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttca 41783453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 10327980 - 10328058
Alignment:
Q  28 ttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||||||| ||||| ||||| | | |||||| ||| |||| ||  |||| || |||||||||||||||||||    
T  10327980 ttcatttggttcatgaatcaagttcaacgaatcaattaccgaatcgagttttgaacaattttcgagttggttcggttca 10328058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 18880278 - 18880320
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  18880278 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 18880320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 27906184 - 27906226
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  27906184 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 27906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 26299898 - 26299975
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||| || || ||||| | | |||||||||| ||||||  || ||||| |||||||||||||||||||    
T  26299898 tcattaggttcatgaatgaagttcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttca 26299975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 32945110 - 32945033
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| || || | | |||||| ||| |||| || |||||||| |||||||||||||||||||    
T  32945110 tcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttca 32945033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 39407457 - 39407534
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||| ||||| ||||| | | |||||||||| ||||||  || ||||| || ||||||||||||||||    
T  39407457 tcattaggttcatgaatcaagttcaacgaatcaattatcgaatcgaatctcgcactatttttgagttggttcggttca 39407534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 7447926 - 7448009
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  7447926 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttca 7448009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 20401058 - 20401129
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  20401058 ggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttca 20401129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 3942229 - 3942309
Alignment:
Q  26 ggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||||||||| | ||| ||||||| | ||| | |||| |||||||||||||| || ||||||||||||||||||    
T  3942229 ggttcatttggttcatgaaccaagttcaatgaatcaactgtcgaatcgaattacgaactttaatcgagttggttcggttca 3942309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 26719871 - 26719948
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| | ||||| |||||||||||| |||| |  |||||||| |||||||||||||| ||||    
T  26719871 tcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattca 26719948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 33899033 - 33898956
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| | ||||| || |||| |||| ||||||  |||||||| |||||||||||||||||||    
T  33899033 tcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttca 33898956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 43052928 - 43053005
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  43052928 tcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 43053005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 49034313 - 49034237
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttc 105  Q
    |||||||||||||| | ||| ||||| | | |||||| ||| ||||||| |||||||| |||||||||| |||||||    
T  49034313 tcatttggttcatgaaccaagttcaacgaaacaattaccgaatcgaatttcgaactattttcgagttggatcggttc 49034237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 665930 - 665859
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | |||||| || |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  665930 ggttcatgaaccaaatttaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 665859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 5776213 - 5776142
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  5776213 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 5776142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 21760641 - 21760595
Alignment:
Q  60 caattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||| |||| || |||||||| |||||||||||||||||||    
T  21760641 caattatcgaatcgagtttcgaactattttcgagttggttcggttca 21760595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 36927090 - 36927132
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  36927090 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 36927132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 45176304 - 45176378
Alignment:
Q  32 tttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||| | ||| ||||| |||  ||||||||||||||||  | ||||||| ||||||| ||||||||||    
T  45176304 tttggttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttca 45176378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 18250082 - 18250005
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | | |||||||||| |||| |   ||||||| |||||||||||||||||||    
T  18250082 tcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggttcggttca 18250005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 18740307 - 18740230
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| || ||||   |||||||| | ||||||  |||||||| |||||||||||||||||||    
T  18740307 tcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttcgagttggttcggttca 18740230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 37401655 - 37401578
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| ||||| |||||   | ||||| |||| |||||||||||||| || |||| |||||| ||||||    
T  37401655 tcatttggttcatgaatcaagttcaacaaatcaattttcgaatcgaattacgaactctaatcgaattggtttggttca 37401578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 39469626 - 39469543
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| ||||||| |||||| | ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  39469626 ttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttggttcagttca 39469543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 39135399 - 39135480
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 104  Q
    ||||| |||||||||||||| | ||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||    
T  39135399 ttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggtt 39135480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 46293308 - 46293225
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | |||||||||| |||||||| || |||||||||  ||||||||||||||||| |||||||||    
T  46293308 ttcggctcatttggttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttca 46293225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 19560831 - 19560786
Alignment:
Q  61 aattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  19560831 aattgtcgagtcgaattccgaactatattcgagttggttcggttca 19560786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 54393538 - 54393455
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||| ||| | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  54393538 ttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 54393455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 12710753 - 12710830
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  12710753 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 12710830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 33438820 - 33438743
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | | ||||| |||| ||||||||| |||| || ||||||||||||||||||    
T  33438820 tcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttca 33438743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 40943612 - 40943687
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 104  Q
    |||||||||||||| | ||| | ||||| |||||||||| | |||| |  |||||||| |||||||||||||||||    
T  40943612 tcatttggttcatgaaccaagtccaatgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggtt 40943687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 32689255 - 32689297
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  32689255 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 32689297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 54432243 - 54432189
Alignment:
Q  52 caatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||| |||| |  |||||||| |||||||||||||||||||    
T  54432243 caatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttca 54432189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 25253790 - 25253830
Alignment:
Q  66 tcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||| || | ||||||||||||||||||||||||||    
T  25253790 tcgagtcgagttccaaactatattcgagttggttcggttca 25253830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 30743660 - 30743700
Alignment:
Q  66 tcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||  | ||||||||||||||||||||||||||||    
T  30743660 tcgagtcgagctccgaactatattcgagttggttcggttca 30743700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 124570 - 124493
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  124570 tcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttca 124493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 15014360 - 15014443
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| ||||| ||| | | | |||||||||| |||||||||||||| || ||||||||||||||||||    
T  15014360 ttcggctcatttggttcatgaatcaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttca 15014443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25124980 - 25124897
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||| | | |||||||| | |||||||||||||| || ||||||||||||||||||    
T  25124980 ttcggctcatttggttcatgaaccaagttcaacgaatcaattatcaaatcgaattacgaactttaatcgagttggttcggttca 25124897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 35810763 - 35810846
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||||| | | ||||| |||| |||||||||||||| || ||||||||||||||||||    
T  35810763 ttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttca 35810846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 28006401 - 28006478
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| |   |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  28006401 tcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttca 28006478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 40159719 - 40159642
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||| |||||| | ||| | ||||| |||||||||||| ||||||  | |||||| |||||||||||||||||||    
T  40159719 tcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaatatcaaactattttcgagttggttcggttca 40159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 7596438 - 7596521
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||  | ||| ||| | | | |||||||||| || ||||||||||| || ||||||||||||||||||    
T  7596438 ttcggctcatttggttcataaaccaagttcgacgaatcaattatcgaatcaaattacgaactctaatcgagttggttcggttca 7596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 14578680 - 14578597
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| |||||   | ||||| || | |||||||||||||| || ||||||||||||||||||    
T  14578680 ttcggctcatttggttcatgaaccaagttcaacaaatcaattgtctaatcgaattacgaactctaatcgagttggttcggttca 14578597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 20347711 - 20347794
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| ||||||||| |||| ||||||||||| | |  |||| ||||||| ||||   |||||||||||||||| |||||||||    
T  20347711 ttcggctcatttggtacatgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttca 20347794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 24469900 - 24469829
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  24469900 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 24469829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 24575954 - 24576037
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||| ||||||||||||||| | ||| ||||| |   |||||||||| || |||  |||||||| |||||||||||||||||||    
T  24575954 ttcgtttcatttggttcatgaaccaagttcaacgagtcaattatcgaatcaaatctcgaactattttcgagttggttcggttca 24576037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 42916209 - 42916126
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || |||| |||||||||||||    
T  42916209 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttca 42916126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 47602945 - 47602874
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | ||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||||||||||    
T  47602945 ggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttca 47602874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 7702921 - 7702963
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  7702921 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 7702963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 23916892 - 23916938
Alignment:
Q  60 caattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||| |||||||||||||| || ||||||||||| ||||||    
T  23916892 caattatcgaatcgaattacgaactttaatcgagttggtttggttca 23916938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 32179944 - 32179986
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  32179944 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 32179986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 36419187 - 36419229
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  36419187 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 36419229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 47983337 - 47983383
Alignment:
Q  60 caattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||| ||||||  |||||||| |||||||||||||||||||    
T  47983337 caattatcgaatcgaatctcgaactattttcgagttggttcggttca 47983383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 15257260 - 15257183
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| | ||||| |||||||||||| |||| |  | |||||| || ||||||||||||||||    
T  15257260 tcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggttcggttca 15257183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 15306544 - 15306621
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||||| |  ||||||||| |||| || ||||||||  || |||||||||||||||    
T  15306544 tcatttggttcatgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttca 15306621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 29677608 - 29677531
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||| || | ||| ||||| | |||||||||| | |||| |  |||||||| |||||||||||||||||||    
T  29677608 tcatttggttcgtgaaccaagttcaacgaaccaattatcaaatcgagtatcgaactattttcgagttggttcggttca 29677531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 31816619 - 31816696
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | | |||||| ||| | || || |||||||| |||||||||||||||||||    
T  31816619 tcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggttcggttca 31816696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 5640347 - 5640264
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||| || ||||||||||||||||||    
T  5640347 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttca 5640264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 13312073 - 13312152
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcga--attacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| | ||||| |||||||||||| ||||  ||  |||||||| |||||||||||||||||||    
T  13312073 tcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatatcgaactattttcgagttggttcggttca 13312152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 8200688 - 8200759
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| ||||| ||||| |||  || |||||||||||||  ||||||||| ||||||||||| ||||||    
T  8200688 ggttcatgaatcaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggtttggttca 8200759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 3081807 - 3081730
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||| || | ||| ||||| | |||||||||||| |||| |  |||||||| |||||| ||||||||||||    
T  3081807 tcatttggttcgtgaaccaagttcaacgaaccaattatcgaatcgagtatcgaactattttcgagctggttcggttca 3081730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 10961885 - 10961808
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | | ||||| |||| || |||||| |||| || ||||||||||||||||||    
T  10961885 tcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttca 10961808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 39478101 - 39478178
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| | ||||| |||||||||||| |||| |  |||||||| |||||||||||||||||||    
T  39478101 tcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttca 39478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 33280072 - 33279989
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || ||||||||||||||||||    
T  33280072 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcaaattacgaactttaatcgagttggttcggttca 33279989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 34516183 - 34516266
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||| ||| ||||| ||||||| | ||||| |||| | |||||||||||| || | ||||||||||||||||    
T  34516183 ttcggctcatttggttgatgaatcaagttcaatgaatcaattgtcgaattgaattacgaactttaattgagttggttcggttca 34516266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 43384845 - 43384922
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||| | |  ||||||||| ||||||  |||||||| |||||||||||||||||||    
T  43384845 tcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttca 43384922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 453569 - 453611
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  453569 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 453611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 27189171 - 27189094
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||| | | | |||||||||| || ||||||||||| || |||||||| |||||||||    
T  27189171 tcatttggttcatgaaccaagttcgacgaatcaattatcgaatctaattacgaactctaatcgagttgattcggttca 27189094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 30713201 - 30713284
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || ||||||||||||||||||    
T  30713201 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgagttggttcggttca 30713284  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 27902534 - 27902449
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttcaat 108  Q
    |||||||||||| ||||||| | ||| ||| | | | ||||| |||| |||| ||||||||| || ||||||||||||||||||||    
T  27902534 ttcggttcattttgttcatgaaccaagttcgacgaatcaattgtcgaatcgatttacgaactttaatcgagttggttcggttcaat 27902449  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 11027953 - 11028036
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| | |||||||||||| || | ||||||||||||||||    
T  11027953 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaattgaattacgaactctaattgagttggttcggttca 11028036  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 20203803 - 20203728
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggtt 104  Q
    |||||||||||||| | ||| ||||| | | ||||| | || |||||||||||||| || ||||||||||||||||    
T  20203803 tcatttggttcatgaaccaagttcaacgaatcaattgttgaatcgaattacgaactttaatcgagttggttcggtt 20203728  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 33831552 - 33831623
Alignment:
Q  35 ggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||| | ||||||||| |||  |  |||||||||||||  ||||||||| ||||||||||||||||||    
T  33831552 ggttcatgaaccaaattcaacggattagatatcgagtcgaatgtcgaactataatcgagttggttcggttca 33831623  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 27634757 - 27634799
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  27634757 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 27634799  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 27464661 - 27464584
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | |||||||||   | |||||||||| || | |  |||||||| |||||||||||||||||||    
T  27464661 tcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttca 27464584  T

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Target: scaffold0223 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 14477 - 14554
Alignment:
Q  29 tcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||| | ||| ||||||| | |||||| ||| |||| || |||||||| |||| ||||||||||||||    
T  14477 tcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttca 14554  T

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Target: scaffold0260 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 10034 - 10117
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| ||||||||| |||| ||||||||||| | |  |||| ||||||| ||||   |||||||||||||||| |||||||||    
T  10034 ttcggctcatttggtacatgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttca 10117  T

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Target: scaffold0224 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 7403 - 7320
Alignment:
Q  23 ttcggttcatttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||| |||||||||||||| | ||| ||| | | | |||||||||| |||||||||||||  || |||| |||||||||||||    
T  7403 ttcggctcatttggttcatgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttca 7320  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Original strand, 19382 - 19424
Alignment:
Q  64 tatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    |||||||||||||  ||||||||| ||||||||||||||||||    
T  19382 tatcgagtcgaatgtcgaactataatcgagttggttcggttca 19424  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 106
Target Start/End: Original strand, 21141 - 21215
Alignment:
Q  32 tttggttcatggatcaaattcaatggaccaattatcgagtcgaattacgaactatattcgagttggttcggttca 106  Q
    ||||||||||| | ||| ||||| | | |||||||||| |||| |  |||||||| |||||||||||||||||||    
T  21141 tttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttca 21215  T

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