View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_528 (Length: 218)
Name: NF10855A_low_528
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_528 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 33104699 - 33104506
Alignment:
| Q |
1 |
tcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacctgtaaga |
100 |
Q |
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| T |
33104699 |
tcaaggttaattatatacctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacctgtaaga |
33104600 |
T |
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| Q |
101 |
aatcgaacatccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
194 |
Q |
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| T |
33104599 |
aatcgaacagccattgcaaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacctgtgcatatgcaaacaa |
33104506 |
T |
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Target: chr1 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 10835806 - 10835967
Alignment:
| Q |
17 |
acctgaacaatagctacacgtaaaaggttaccacgcagtccaacagcaatggaagctgcagccatgactgcaggacctgtaagaaatcgaacatccattg |
116 |
Q |
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|||||||||||||||||| ||| ||| | ||||| || ||||| || || |||||||| ||||| ||||| ||||| ||||| |||| | | |||| | |
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| T |
10835806 |
acctgaacaatagctacatgtaggagggtcccacggaggccaacggcgatagaagctgctgccataactgctggaccagtaaggaatcttatagccatgg |
10835905 |
T |
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| Q |
117 |
caaatgaagcaactgagtttccacatgcaatcatcttgggttgtagagccataaacaaacct |
178 |
Q |
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| T |
10835906 |
caaatgaagcaacagaattcccacatgcaatgatcttgggttgaagagccataaacagacct |
10835967 |
T |
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