View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_529 (Length: 218)
Name: NF10855A_low_529
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_529 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 4842186 - 4842373
Alignment:
| Q |
22 |
ttttgcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccg |
121 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||| |||| |||||| |||| |||||||| ||||||||||||||||||||||||||| | |
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| T |
4842186 |
tttttcatcttacaaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctg |
4842285 |
T |
|
| Q |
122 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagcctatatt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
4842286 |
gaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccaacattatttatcaaccaacttgggagtgagccaatatt |
4842373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 5173339 - 5173161
Alignment:
| Q |
19 |
agattttgcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatctt |
118 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |||| |
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| T |
5173339 |
agatttttcatcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatata------tctt |
5173246 |
T |
|
| Q |
119 |
ccggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttgggagtgagcc |
203 |
Q |
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| T |
5173245 |
ctggaagcaaaccactaaaattgttgtttgatagatccaaatattgtatggcatcattatttatcaaccaacttgggagtgagcc |
5173161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 7142603 - 7142424
Alignment:
| Q |
27 |
catcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccggaagc |
126 |
Q |
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|||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
7142603 |
catcataccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaagc |
7142504 |
T |
|
| Q |
127 |
aaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaa---cttgggagtgagcc |
203 |
Q |
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|||||||| |||||||||||||||| |||||||| |||||| |||||||||| |||||||||| |||||||||||||| |
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| T |
7142503 |
aaaccacttaaattgttgtttgatatatccaaatgttgtatcccatcattatgtatcaaccaatttcttgggagtgagcc |
7142424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 5196066 - 5195887
Alignment:
| Q |
27 |
catcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccggaagc |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||||| ||||||| |||||| |
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| T |
5196066 |
catcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagc |
5195967 |
T |
|
| Q |
127 |
aaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaacca---acttgggagtgagcc |
203 |
Q |
| |
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|||||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||||| ||||||||||||||| |
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| T |
5195966 |
aaaccactcaaattgttgtttgatatatccaaatatatcatgtcatcattatgtatcaaccaattacttgggagtgagcc |
5195887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 5182666 - 5182497
Alignment:
| Q |
27 |
catcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccggaagc |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
5182666 |
catcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagc |
5182567 |
T |
|
| Q |
127 |
aaaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttggga |
196 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||| | ||| || ||||| ||||||||||||||||| |
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| T |
5182566 |
aaaccactcaaattgttgtttgatatatccaaataattcatgttatgattatctatcaaccaacttggga |
5182497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 5214228 - 5214087
Alignment:
| Q |
22 |
ttttgcatcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccg |
121 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |||| |||||||| |||||||||||||||||||||||||| | |
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| T |
5214228 |
tttttcatcttaccaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttttg |
5214129 |
T |
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| Q |
122 |
gaagcaaaccactaaaattgttgtttgatagatccaaatatt |
163 |
Q |
| |
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| T |
5214128 |
gaagaaaaccacttaaactgttgattgatatatccaaatatt |
5214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 4856686 - 4856834
Alignment:
| Q |
48 |
tatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccggaagcaaaccactaaaattgttgttt |
147 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaaccactcaaattgttgttt |
4856785 |
T |
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| Q |
148 |
gatagatccaaatattgtatgccatcattatttatcaaccaacttggga |
196 |
Q |
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|||| ||||||||| | ||| || ||||| ||||||| ||||||||| |
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| T |
4856786 |
gatatatccaaataattcatgttatgattatctatcaacgaacttggga |
4856834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 5160420 - 5160253
Alignment:
| Q |
28 |
atcttaccaattgatgaaggtatatttccttcaaagctattcattgaaaagttcagataggtaatactaggaaggaatataccaatatcttccggaagca |
127 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| |||||||||| | ||| ||||| | |||| |
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| T |
5160420 |
atcttaccaattgatgaaggtatatttccttcaaagctattccatgaaaagttcaactgtgtagcacttggaaggaataaatcaaaatcttttgttagca |
5160321 |
T |
|
| Q |
128 |
aaccactaaaattgttgtttgatagatccaaatattgtatgccatcattatttatcaaccaacttggg |
195 |
Q |
| |
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| ||||| |||||||||||||||| ||||||||| | ||| || ||||| |||||||||||||||| |
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| T |
5160320 |
acccacttaaattgttgtttgatatatccaaataattaatgttatgattatgtatcaaccaacttggg |
5160253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 5203345 - 5203295
Alignment:
| Q |
153 |
atccaaatattgtatgccatcattatttatcaaccaacttgggagtgagcc |
203 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||| |||||| |
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| T |
5203345 |
atccaaatattgtatatcatcattatgtatcaaccaacttgggaatgagcc |
5203295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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