View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_530 (Length: 218)

Name: NF10855A_low_530
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_530
NF10855A_low_530
[»] chr3 (2 HSPs)
chr3 (15-125)||(30991335-30991445)
chr3 (34-126)||(93103-93195)
[»] chr5 (4 HSPs)
chr5 (19-132)||(14148605-14148718)
chr5 (19-127)||(18014715-18014823)
chr5 (19-127)||(39058370-39058478)
chr5 (34-99)||(24043053-24043120)
[»] chr8 (3 HSPs)
chr8 (19-126)||(3469491-3469598)
chr8 (19-127)||(42906197-42906305)
chr8 (75-129)||(30929150-30929204)
[»] chr1 (3 HSPs)
chr1 (19-126)||(46435881-46435988)
chr1 (19-126)||(35760737-35760844)
chr1 (31-119)||(29119726-29119817)
[»] chr4 (1 HSPs)
chr4 (19-126)||(24021290-24021397)
[»] chr6 (1 HSPs)
chr6 (32-122)||(3808195-3808285)
[»] chr7 (1 HSPs)
chr7 (132-194)||(10330950-10331012)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 30991445 - 30991335
Alignment:
Q  15 gctggtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatg 114  Q
    ||||||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30991445 gctggtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatg 30991346  T
Q  115 gctccgcccct 125  Q
    |||||||||||    
T  30991345 gctccgcccct 30991335  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 93195 - 93103
Alignment:
Q  34 atctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcccctg 126  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  93195 atctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcccctg 93103  T

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Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 14148718 - 14148605
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14148718 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctc 14148619  T
Q  119 cgcccctgattata 132  Q
    ||||||||||||||    
T  14148618 cgcccctgattata 14148605  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 18014715 - 18014823
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18014715 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtggaggcacttgcttgcacaagagccaacatggctc 18014814  T
Q  119 cgcccctga 127  Q
    |||||||||    
T  18014815 cgcccctga 18014823  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 39058370 - 39058478
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  39058370 gtgctggtgctggaaatctatgatgtagtattatataggatggatataaaaatttcaaaattaatgggggcacttgcttgcacaagagccaacatcgctc 39058469  T
Q  119 cgcccctga 127  Q
    |||||||||    
T  39058470 cgcccctga 39058478  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 24043053 - 24043120
Alignment:
Q  34 atctatgatgtagtattatatatgatggatataaaaatttcaaaa--ttagtgggggcacttgcttgc 99  Q
    |||||||| |||||||||| || |||| |||  ||||| ||||||  |||||||||||||||||||||    
T  24043053 atctatgaagtagtattatgtaggatgaatactaaaatctcaaaaaattagtgggggcacttgcttgc 24043120  T

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Target: chr8 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 3469491 - 3469598
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3469491 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 3469590  T
Q  119 cgcccctg 126  Q
    ||||||||    
T  3469591 cgcccctg 3469598  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 42906305 - 42906197
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  42906305 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttaaaaattagtgggggcacttgcttgcacaagagccaacatggctc 42906206  T
Q  119 cgcccctga 127  Q
    |||||||||    
T  42906205 cgcccctga 42906197  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 30929150 - 30929204
Alignment:
Q  75 aaaattagtgggggcacttgcttgcacaagagccaacatggctccgcccctgatt 129  Q
    ||||||||||||||||||||||||||||   || ||| |||||||||| ||||||    
T  30929150 aaaattagtgggggcacttgcttgcacagtggctaacgtggctccgccactgatt 30929204  T

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Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 46435881 - 46435988
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46435881 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 46435980  T
Q  119 cgcccctg 126  Q
    ||||||||    
T  46435981 cgcccctg 46435988  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 35760737 - 35760844
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35760737 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgtacaagagccaacatggctc 35760836  T
Q  119 cgcccctg 126  Q
    ||||||||    
T  35760837 cgcccctg 35760844  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 29119726 - 29119817
Alignment:
Q  31 gaaatctatgatgtagtattat---atatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctcc 119  Q
    ||||||||||||||||||||||   ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29119726 gaaatctatgatgtagtattattatataggatggatatgaaaatttcaaaattagtgggggcacttgcttgcacaaaagccaacatggctcc 29119817  T

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Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 24021397 - 24021290
Alignment:
Q  19 gtgctggtgttcgaaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctc 118  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24021397 gtgctggtgctggaaatctatgatgtagtattatataggatggatatgaaaattttaaaattagtgggggcacttgcttgcacaagagccaacatggctc 24021298  T
Q  119 cgcccctg 126  Q
    ||||||||    
T  24021297 cgcccctg 24021290  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 3808195 - 3808285
Alignment:
Q  32 aaatctatgatgtagtattatatatgatggatataaaaatttcaaaattagtgggggcacttgcttgcacaagagccaacatggctccgcc 122  Q
    |||||| |||| |||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||    
T  3808195 aaatctttgatatagtattatataggatggatatgaaaatttcaaaatttgtggtggcacatgcttgcacaagagcgaacatggctccgcc 3808285  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 10330950 - 10331012
Alignment:
Q  132 aaatgattcaccctcattttccgatacaacttttttcttcgtgcttgagtgtaaataacctta 194  Q
    ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  10330950 aaatgcttcaccctcatttttcggtacaacttttttcttcgtgcttgagtgtaaataacctta 10331012  T

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