View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_536 (Length: 215)
Name: NF10855A_low_536
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_536 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 32528434 - 32528231
Alignment:
| Q |
1 |
aagttctcgctccactctccttattttgttcctagagttactctcatattaactttctttctgtcacactcaatcctaagatgtagttcaagtcttttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32528434 |
aagttctcgctccactctccttattttgttcctagagttactctcatattaactttctttctgtcacactcaatcctaagatgtagttcaagtcttttgt |
32528335 |
T |
|
| Q |
101 |
gtagatcacatttctctctctaaatcannnnnnnnagtactaaaagtagctaagagacagttttggtagtactagaaagtgtcatcttcggttgtttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
32528334 |
gtagatcacatttctctctctaaatcattttttttagtactaaaagtagctaagagacagttttggtagtactagaaagtgtcatcttaggttgtttgtt |
32528235 |
T |
|
| Q |
201 |
tcat |
204 |
Q |
| |
|
|||| |
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|
| T |
32528234 |
tcat |
32528231 |
T |
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