View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_546 (Length: 212)
Name: NF10855A_low_546
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_546 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 169; Significance: 8e-91; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 40182 - 40010
Alignment:
| Q |
21 |
gatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaa |
120 |
Q |
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| T |
40182 |
gatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaa |
40083 |
T |
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| Q |
121 |
aatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttca |
193 |
Q |
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| T |
40082 |
aatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgtcgttttgctgcttca |
40010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 33511 - 33391
Alignment:
| Q |
71 |
ggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaa |
170 |
Q |
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| T |
33511 |
ggtacaattattctatccaatttgagaaccacaagtgtttcacacacgaaaatggtaggcgacaaggtcacttctaccatgcatagatagagatcctcga |
33412 |
T |
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| Q |
171 |
caccgcgttgttttgctgctt |
191 |
Q |
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| T |
33411 |
ccccacgtcgttttgctgctt |
33391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Complemental strand, 21826 - 21734
Alignment:
| Q |
100 |
cacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttc |
192 |
Q |
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| T |
21826 |
cacaagtgttctacaaacgaaaatggtaggcgacaaggtcacttctaacaagtttagatagagatcctcgaccccacgtcgttttgcttcttc |
21734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 19970209 - 19970313
Alignment:
| Q |
25 |
aagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatg |
124 |
Q |
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||||||||| ||||||||||||||||| ||| | ||| |||||| | ||||| || ||| |||||| || ||||||||||||||||| ||||||| |
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| T |
19970209 |
aagggttttgagcgaaggaagatcaacagaagaacgaaacatagttgttacatgtatgctaaacaatttcagaaccacaagtgtttcacagcagaaaatg |
19970308 |
T |
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| Q |
125 |
gtagg |
129 |
Q |
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||||| |
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| T |
19970309 |
gtagg |
19970313 |
T |
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