View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_547 (Length: 212)

Name: NF10855A_low_547
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_547
NF10855A_low_547
[»] chr6 (7 HSPs)
chr6 (23-196)||(28097222-28097395)
chr6 (34-149)||(29827263-29827378)
chr6 (123-187)||(28186633-28186697)
chr6 (124-187)||(28326717-28326780)
chr6 (124-187)||(28504353-28504416)
chr6 (123-187)||(28296619-28296683)
chr6 (123-187)||(28515390-28515454)
[»] chr2 (1 HSPs)
chr2 (23-196)||(3280889-3281062)
[»] chr5 (1 HSPs)
chr5 (23-187)||(16692106-16692270)
[»] scaffold0019 (1 HSPs)
scaffold0019 (23-185)||(57073-57235)
[»] chr8 (1 HSPs)
chr8 (23-158)||(31906322-31906457)


Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 23 - 196
Target Start/End: Original strand, 28097222 - 28097395
Alignment:
Q  23 aaacactcttctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaata 122  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28097222 aaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaatt 28097321  T
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagtataat 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097322 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 149
Target Start/End: Complemental strand, 29827378 - 29827263
Alignment:
Q  34 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaataccattcttcta 133  Q
    |||||||||||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| | |||||||||||    
T  29827378 tcatcttcctccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttcta 29827279  T
Q  134 tatgctttccatacaa 149  Q
    ||| ||||||| ||||    
T  29827278 tattctttccaaacaa 29827263  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 28186697 - 28186633
Alignment:
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    ||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186697 ccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 28326780 - 28326717
Alignment:
Q  124 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28326780 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28326717  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 28504416 - 28504353
Alignment:
Q  124 cattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    |||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28504416 cattctactatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28504353  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 28296619 - 28296683
Alignment:
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    |||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296619 ccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 28515454 - 28515390
Alignment:
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    |||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515454 ccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 3281062 - 3280889
Alignment:
Q  23 aaacactcttctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaata 122  Q
    ||||||| | ||| ||||||||||||||||||||||||||   |||||| || |||||||||| | ||||||| |||||||||||||||||||||||||     
T  3281062 aaacactttgctcgtcttcctccaaagcatcaaaactcactttaagtatcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaatt 3280963  T
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccagcagtataat 196  Q
    ||| |||| ||||| ||||||| |||||||||||||||||| ||| || |||||||||||||||| || |||||    
T  3280962 ccactcttttatattctttccaaacaagttggaacctaatacttctaatgccaatggaaggccagaagcataat 3280889  T

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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 16692270 - 16692106
Alignment:
Q  23 aaacactcttctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaata 122  Q
    |||||||||| |||||||||||||||  ||||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |     
T  16692270 aaacactcttttcatcttcctccaaactatcaaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagattt 16692171  T
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 187  Q
    |||||||||||||| ||||||| ||||||| || |||| || ||| || || |||||||||||||    
T  16692170 ccattcttctatattctttccaaacaagttagatcctactacttctaaagctaatggaaggccag 16692106  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 57073 - 57235
Alignment:
Q  23 aaacactcttctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaata 122  Q
    ||||| |||||||||||||||||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| |     
T  57073 aaacattcttctcatcttcctccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagattt 57172  T
Q  123 ccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggcc 185  Q
    ||||||| |||||| ||||||| ||||||| ||||| | || ||| |||||||||||||||||    
T  57173 ccattctcctatattctttccaaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 31906457 - 31906322
Alignment:
Q  23 aaacactcttctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaata 122  Q
    ||||||| ||||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||||||  ||   ||| |     
T  31906457 aaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatatcgatgtaatgcagattc 31906358  T
Q  123 ccattcttctatatgctttccatacaagttggaacc 158  Q
    |||||||| ||||| ||||||| | || ||||||||    
T  31906357 ccattcttgtatattctttccaaataaattggaacc 31906322  T

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