View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_55 (Length: 407)
Name: NF10855A_low_55
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_55 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 36 - 386
Target Start/End: Complemental strand, 337279 - 336929
Alignment:
| Q |
36 |
ttgttcagtaaaatgtttagatatgaatcactcattacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
135 |
Q |
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| T |
337279 |
ttgttcagtaaaatgtttagatatgaatcactcactacagcacatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaac |
337180 |
T |
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| Q |
136 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagtt |
235 |
Q |
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| T |
337179 |
atatattattagagtagatcagaattcagaagggataccttatcttttacattcccaaggacaattctataaggagcaattccaggaagatgagggagtt |
337080 |
T |
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| Q |
236 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggaga |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
337079 |
ttggctccaaaagcttctgaaaactggatcttcctatttgggattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggaga |
336980 |
T |
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| Q |
336 |
tcgtggaatgctcgctgcacttgttggggatgcatgactattggaacttcc |
386 |
Q |
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| T |
336979 |
tcgtggaatgctcgctgcacttgttggagatgcatgactattggaacttcc |
336929 |
T |
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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
170 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
263 |
Q |
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| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
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