View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_550 (Length: 211)

Name: NF10855A_low_550
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_550
NF10855A_low_550
[»] chr1 (12 HSPs)
chr1 (33-211)||(16584872-16585050)
chr1 (87-211)||(25785805-25785929)
chr1 (41-211)||(8083994-8084165)
chr1 (57-211)||(1161441-1161594)
chr1 (88-211)||(11619973-11620096)
chr1 (33-191)||(42009997-42010155)
chr1 (35-211)||(18461120-18461287)
chr1 (41-191)||(512961-513111)
chr1 (32-125)||(32678514-32678607)
chr1 (41-123)||(8414674-8414756)
chr1 (78-210)||(11911629-11911762)
chr1 (56-123)||(27320560-27320627)
[»] chr8 (12 HSPs)
chr8 (21-211)||(17722428-17722608)
chr8 (33-211)||(35948827-35949005)
chr8 (33-211)||(7956348-7956516)
chr8 (33-211)||(44223335-44223503)
chr8 (33-170)||(9505015-9505153)
chr8 (86-191)||(3767684-3767789)
chr8 (33-191)||(16570890-16571047)
chr8 (33-170)||(32321799-32321936)
chr8 (41-191)||(34760834-34760975)
chr8 (134-208)||(9040513-9040587)
chr8 (33-85)||(9040427-9040479)
chr8 (82-118)||(8266063-8266099)
[»] chr4 (7 HSPs)
chr4 (33-211)||(23107919-23108097)
chr4 (36-211)||(4413456-4413632)
chr4 (32-211)||(24466323-24466502)
chr4 (55-211)||(28319298-28319454)
chr4 (41-170)||(53393204-53393333)
chr4 (36-170)||(8606181-8606315)
chr4 (33-122)||(39839064-39839153)
[»] chr5 (8 HSPs)
chr5 (32-209)||(16746550-16746727)
chr5 (33-205)||(31895896-31896068)
chr5 (36-211)||(19947711-19947886)
chr5 (92-211)||(16746429-16746548)
chr5 (55-170)||(1498243-1498358)
chr5 (41-184)||(29126091-29126234)
chr5 (43-81)||(41092125-41092163)
chr5 (64-124)||(30126223-30126283)
[»] scaffold0879 (1 HSPs)
scaffold0879 (32-211)||(588-767)
[»] chr7 (13 HSPs)
chr7 (33-203)||(7352385-7352555)
chr7 (32-211)||(39695086-39695260)
chr7 (86-211)||(7994998-7995123)
chr7 (94-211)||(46993309-46993426)
chr7 (33-191)||(48070614-48070772)
chr7 (33-170)||(3996991-3997128)
chr7 (88-211)||(11727336-11727449)
chr7 (65-169)||(46265353-46265457)
chr7 (65-205)||(2922986-2923125)
chr7 (41-124)||(12013026-12013109)
chr7 (33-184)||(27226938-27227089)
chr7 (41-97)||(12471855-12471911)
chr7 (45-97)||(35738239-35738291)
[»] chr3 (12 HSPs)
chr3 (33-211)||(46655514-46655693)
chr3 (36-184)||(44471020-44471168)
chr3 (32-208)||(11503337-11503513)
chr3 (32-184)||(30554574-30554726)
chr3 (41-130)||(46892612-46892701)
chr3 (69-170)||(27524053-27524154)
chr3 (88-184)||(779533-779629)
chr3 (41-129)||(23307117-23307205)
chr3 (35-98)||(12937849-12937912)
chr3 (33-191)||(26757593-26757751)
chr3 (78-164)||(44285605-44285691)
chr3 (33-133)||(23659401-23659501)
[»] chr2 (11 HSPs)
chr2 (33-211)||(31111413-31111591)
chr2 (35-211)||(13852277-13852453)
chr2 (86-211)||(4638207-4638332)
chr2 (33-191)||(29109190-29109348)
chr2 (45-192)||(3919882-3920029)
chr2 (33-152)||(12893980-12894099)
chr2 (152-211)||(36009278-36009337)
chr2 (78-164)||(37630375-37630461)
chr2 (86-208)||(38607020-38607141)
chr2 (41-170)||(5526225-5526353)
chr2 (32-119)||(30906942-30907029)
[»] scaffold0565 (1 HSPs)
scaffold0565 (93-211)||(1852-1970)
[»] chr6 (7 HSPs)
chr6 (36-169)||(7176529-7176662)
chr6 (63-170)||(23301441-23301548)
chr6 (33-123)||(11971456-11971546)
chr6 (63-191)||(23300455-23300583)
chr6 (88-190)||(7551423-7551525)
chr6 (43-164)||(9826747-9826868)
chr6 (93-170)||(23585913-23585990)
[»] scaffold0070 (1 HSPs)
scaffold0070 (33-123)||(33729-33819)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 6e-73; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 16585050 - 16584872
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16585050 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16584951  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  16584950 tccgaaccaatcgataccgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaat 16584872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 25785805 - 25785929
Alignment:
Q  87 caaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcg 186  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||| ||||||    
T  25785805 caaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatcgaaaccgatatagtttggtttggttcatggtttttcatttcg 25785904  T
Q  187 agatctgtgaaaccgatgaaccaat 211  Q
    ||||| |||||||||||||||||||    
T  25785905 agatccgtgaaaccgatgaaccaat 25785929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 211
Target Start/End: Original strand, 8083994 - 8084165
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatccgaac 139  Q
    ||||||||||| | | |||||| |||| |||||||||||||  || ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  8083994 taagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatccgaac 8084093  T
Q  140 taatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
     ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||| |||||| ||||    
T  8084094 caatcgaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaat 8084165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 1161594 - 1161441
Alignment:
Q  57 aaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatcta 156  Q
    |||||| |||| | |||||  ||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| | | ||||||||||||||||    
T  1161594 aaccaacgaaatcaaaagtttaaaccgaaccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatcta 1161496  T
Q  157 gtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  1161495 gtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaat 1161441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 11619973 - 11620096
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    ||||| ||||||||||| | |||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||    
T  11619973 aaaccaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaactaatcgaaaccgatctagtttggtttggttcatggtttttcattttga 11620072  T
Q  188 gatctgtgaaaccgatgaaccaat 211  Q
    ||||||||||||||||||||||||    
T  11620073 gatctgtgaaaccgatgaaccaat 11620096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 42010155 - 42009997
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||| |||||| || ||||||| |||||||| ||||||||| | |||||||||||||||||||| || |||||||||||||||||||||| |    
T  42010155 taggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccga 42010056  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    ||| ||| ||| |||||||||||||||| |||||  ||||| ||||| |||| ||||||    
T  42010055 tccaaaccaattgaaaccgatctagtttagtttgactcatggtttttcattttgagatc 42009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 35 - 211
Target Start/End: Original strand, 18461120 - 18461287
Alignment:
Q  35 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 134  Q
    ||||| |||||||||| || |||||||| |||||| |||||||||||| |||||||         ||||| ||||||||| ||||||||| ||| | |||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaa---------tatccgaccttgtttagttcggtttcaaatcgatc 18461210  T
Q  135 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
     | || |||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18461211 tggaccaatcaaaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaat 18461287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 191
Target Start/End: Original strand, 512961 - 513111
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    ||||||||||| | |||||  |||||| | |||  ||||| ||||||||||||||||| ||||||| ||||||||||||||||  ||||||| ||||||     
T  512961 taagtggttcggacaaaactgatgaaatcaaaaacccaaatcgaaccaaaccgaaaaagtatccaatcttgtttggttcggttcaaaaccaaaccgaacc 513060  T
Q  141 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    || | |||||||||||||||| || | ||| | |||||| |||| ||||||    
T  513061 aacctaaaccgatctagtttgattcgattcttaatttttaattttgagatc 513111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 32678607 - 32678514
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttg 125  Q
    |||| ||| ||||||||||||| |||||| |||||| ||||| | |||||||||| || |||||||||||||| ||||||||||||| ||||||    
T  32678607 atagaggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaactaagccgaaaaaatatccgaccttgtttggtttggtttg 32678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 8414756 - 8414674
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||||||||| | |||||| ||||||| |||| ||||||| |||| ||||||||||| ||||| ||||||||||||| ||||    
T  8414756 taagtggttcggacaaaaccgatgaaactgaaaatccaaactgaacaaaaccgaaaaagtatccgaccttgtttggtttggtt 8414674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 11911629 - 11911762
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaa-tatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatt 176  Q
    ||||| ||||||  |||||||| ||||| ||||||||||||||||||  ||||| | |||||| || | |||||||||||||||| ||| |||| || ||    
T  11911629 aaaccaaaccaattcgaaaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggtt 11911728  T
Q  177 ttttatttcgagatctgtgaaaccgatgaaccaa 210  Q
    ||| |||| || ||| |   ||||||||||||||    
T  11911729 tttaattttgaaatccgatgaaccgatgaaccaa 11911762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 27320627 - 27320560
Alignment:
Q  56 aaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||| |||||||||||| || |||| ||| |||| | ||||| ||||| ||||||||||||||||||    
T  27320627 aaaccgatgaaaccgaaaatctaaactgaatcaaatcaaaaaagtatccgaccttgtttggttcggtt 27320560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 17722608 - 17722428
Alignment:
Q  21 atcaacgagagataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcg 120  Q
    ||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |          |||||||||||||||||||||||||    
T  17722608 atcaacgagagataggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccgga----------aaaatatccaaccttgtttggttcg 17722519  T
Q  121 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17722518 gtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaat 17722428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 35948827 - 35949005
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||| |||| | |||||||| |||| ||||||||||||  |||||||| | ||||||||||| || |||||||||||||||||||||| |    
T  35948827 taggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccga 35948926  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||||  | || ||| ||||||||||||||||| |||||| ||||| |||||||||||  ||||||||||||||||||    
T  35948927 tccgaatcattcaaaatcgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaat 35949005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 7956516 - 7956348
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          ||||||| | |||||| || ||| ||||||||||| |    
T  7956516 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatattcgaccttgctttgtttggtttgaaaccga 7956427  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    | ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||    
T  7956426 ttcgaaccaatcgaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaat 7956348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 44223503 - 44223335
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||||||| ||||||||||||||||||||||          |||||||   | |||||||||||| |||| ||||| |    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaa----------aaaatatatgatcttgtttggttcagtttaaaaccga 44223414  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    || |||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  44223413 tctgaaccaatcgaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaat 44223335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 9505015 - 9505153
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccg-aaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    ||||||| ||||||||| | |||||||| |||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||| ||  ||| |     
T  9505015 taggggtgtaagtggtttggataaaaccgatgaaaccgaaaatccaaacctaaccaaaacgaaaaaaatatccaaccttgtttggttcgattcaaaatcg 9505114  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    | |||||| || | |||||||| |||||||||| |||||    
T  9505115 aaccgaaccaaccaaaaccgatatagtttggttcggttc 9505153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 3767789 - 3767684
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    ||||||||||||| ||||| ||||||||| ||||||||  ||||| | |||||| |||| |||||||||||||||||||||||||  | ||||||||||     
T  3767789 ccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaatctaaaccgatctagtttggtttggttctcggttttttatttt 3767690  T
Q  186 gagatc 191  Q
    ||||||    
T  3767689 gagatc 3767684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 16571047 - 16570890
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||| ||||| | | |||||| |||||| | ||| | |||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |    
T  16571047 taggggtgtaattggtttggacaaaaccgatgaaatcaaaaattcaaaccgaaccaaacc-aaaaaatatccaaccttgtttggtttggttcaaaaccga 16570949  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     || ||| || | ||||||||||| ||||||| |||||  ||||||| |||| ||||||    
T  16570948 accaaaccaacctaaaccgatctaatttggttaggttctcgatttttaattttgagatc 16570890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 32321799 - 32321936
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    |||||||  |||||||||| |||||||  ||||||||||||  | ||||| || |||||||||||| ||| | ||||||||||||||||||| ||| |||    
T  32321799 taggggtgcaagtggttcggataaaactgatgaaaccgaaaacctaaaccaaatcaaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaa 32321898  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
     |||||  ||   ||||||||||| ||||||| |||||    
T  32321899 accgaatcaacataaaccgatctaatttggttcggttc 32321936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 191
Target Start/End: Complemental strand, 34760975 - 34760834
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    |||| |||||||| |||||| |||||||||||| ||||||||||         ||||| ||||  | ||||||||||||||||  ||| | | ||||||     
T  34760975 taagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccga---------aaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaacc 34760885  T
Q  141 aatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    || | ||||||||||||||||||||||||| || ||||| |||| ||||||    
T  34760884 aacctaaaccgatctagtttggtttggttcttggtttttgattttgagatc 34760834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 208
Target Start/End: Original strand, 9040513 - 9040587
Alignment:
Q  134 ccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 208  Q
    |||||| |||| |||||||||| ||||||||||||||  | ||||| |||| |||||||  ||||||||||||||    
T  9040513 ccgaaccaatctaaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 9040427 - 9040479
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaa 85  Q
    ||||||| |||| |||||| |||||||| |||||| |||||||||||||||||    
T  9040427 taggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaa 9040479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 8266063 - 8266099
Alignment:
Q  82 cgaaccaaaccgaaaaaatatccaaccttgtttggtt 118  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  8266063 cgaaccaaaccgaaaaagtatccaaccttatttggtt 8266099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 33 - 211
Target Start/End: Complemental strand, 23108097 - 23107919
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||| | |||||||||| ||||||||||||| ||||||||||| |    
T  23108097 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccga 23107998  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||    
T  23107997 tccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaat 23107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 4413456 - 4413632
Alignment:
Q  36 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaaccaatc 134  Q
    |||| ||||||||||| |||||||||| |||||| ||||| ||||| |||| | |||||||| ||||||| | ||||||||||||||||| ||||| |||    
T  4413456 gggtgtaagtggttcggataaaaccaacgaaaccaaaagttcaaactgaactagaccgaaaaaaatatccgatcttgtttggttcggtttaaaaccgatc 4413555  T
Q  135 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |||||||    
T  4413556 cgaaccaatcgaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaat 4413632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 24466502 - 24466323
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  24466502 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 24466403  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||    
T  24466402 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaat 24466323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 55 - 211
Target Start/End: Complemental strand, 28319454 - 28319298
Alignment:
Q  55 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||||| |||| |||||||| ||| ||||||||||||||||||||||  || ||||||||||||||||||||||  ||||||| |||| ||| ||||     
T  28319454 aaaaccaacgaaatcgaaagtctaaatcgaaccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatt 28319355  T
Q  155 tagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    || |||||||||||||||| ||||| ||||||||||  ||||| | |||||| ||||    
T  28319354 taatttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaat 28319298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 53393333 - 53393204
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    ||||||||||| | |||||| |||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||||||| ||||  | ||||||     
T  53393333 taagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccgaacc 53393234  T
Q  141 aatcgaaaccgatctagtttggtttggttc 170  Q
    || | ||||||||||||||||||| |||||    
T  53393233 aacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 8606315 - 8606181
Alignment:
Q  36 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| ||||||||||| | |||||| | ||||| || |||| |||   ||||||||||||||| |||||||| |||||||| ||||||  |||||||  |    
T  8606315 gggtgtaagtggttcggacaaaaccgacgaaactgatagtcaaaattaaaccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatc 8606216  T
Q  136 gaactaatcgaaaccgatctagtttggtttggttc 170  Q
    |||| |||| |||||||||| | |||||| |||||    
T  8606215 gaaccaatctaaaccgatcttggttggttcggttc 8606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 39839153 - 39839064
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggt 122  Q
    ||||||| ||||||||||| |  ||||| |||||||||||| |||||||| || ||||| |||||| |||   |||||||||||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaaccaaatcaaactgaaaaagtatttgaccttgtttggttcggt 39839064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 16746727 - 16746550
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||| | ||||||||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  16746727 atagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16746628  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacca 209  Q
    |||| ||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||| |||||| ||||||||||    
T  16746627 atccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 31895896 - 31896068
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | ||||||||  ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatga 205  Q
    || |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaaccgatga 31896068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 36 - 211
Target Start/End: Original strand, 19947711 - 19947886
Alignment:
Q  36 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatcc 19947810  T
Q  136 gaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
     ||| ||||||| | |||||| |||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||||    
T  19947811 aaaccaatcgaatctgatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaat 19947886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 92 - 211
Target Start/End: Complemental strand, 16746548 - 16746429
Alignment:
Q  92 cgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttcatttcgagatc 16746449  T
Q  192 tgtgaaaccgatgaaccaat 211  Q
     |||||| ||||||||||||    
T  16746448 cgtgaaatcgatgaaccaat 16746429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 1498358 - 1498243
Alignment:
Q  55 aaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatc 154  Q
    |||||| |||||||||||| ||||||||||| ||||| || ||||||||| ||||||||||||||||||  ||||| | | |||| || | ||||||||     
T  1498358 aaaaccgatgaaaccgaaaatccaaaccgaatcaaactgagaaaatatccgaccttgtttggttcggttcaaaaccgaactgaaccaacctaaaccgatg 1498259  T
Q  155 tagtttggtttggttc 170  Q
    |||||  |||||||||    
T  1498258 tagttaagtttggttc 1498243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 184
Target Start/End: Original strand, 29126091 - 29126234
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    ||||||||||| | |||||||| ||||  || | |  ||||||||||||||||||||| ||||| |  |||||||| || |||||||||| | |  |||     
T  29126091 taagtggttcggacaaaaccaacgaaatggagaatttaaaccgaaccaaaccgaaaaagtatccgattttgtttgggtcagtttgaaaccgaactaaacc 29126190  T
Q  141 aatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    || | |||||| |||||||| |||||||||   |||||||||||    
T  29126191 aacctaaaccggtctagtttagtttggttctcaattttttattt 29126234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 41092163 - 41092125
Alignment:
Q  43 agtggttcgaataaaaccaatgaaaccgaaagtccaaac 81  Q
    ||||||||||| |||||||||||||||||||||| ||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaac 41092125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 30126283 - 30126223
Alignment:
Q  64 gaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 124  Q
    |||| ||||| ||||||||||| |||||  ||||||||| | |||||||||||||| ||||    
T  30126283 gaaatcgaaactccaaaccgaatcaaacaaaaaaaatattcgaccttgtttggttctgttt 30126223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 767 - 588
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| ||||||||||  |  ||||||| |||||||| ||||||||||  ||||||| |||||||||||  | |||||||||||||||||||||||     
T  767 ataggggtgtaagtggttcagactaaaccaacgaaaccgatagtccaaaccagaccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccg 668  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    |||||||| ||| ||||||||||||||||| ||||||||||| ||||| |||| |||||| |||||||||||||||||||    
T  667 atccgaaccaattgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaat 588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 203
Target Start/End: Complemental strand, 7352555 - 7352385
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||| ||||||  | |||||||| ||||||||||||||||| | |||| |||||||||||||||| || || ||||||| ||||||||||| |    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgat 203  Q
    ||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat 7352385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 39695086 - 39695260
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| |||||||||||   |||||||| |||||||||||||||| ||     |||||||| | |||||| |||||||||||||||||||||||||     
T  39695086 ataggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaaccc-----aaaccgaagagatatccgaccttgtttggttcggtttgaaaccg 39695180  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    ||| |||| ||||||||| ||| ||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||    
T  39695181 atctgaaccaatcgaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaat 39695260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 7994998 - 7995123
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    |||||| ||||||||||   ||||||||||||||||||  ||| | |||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||     
T  7994998 ccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaattgaaaccgatctagtttggtttggttcatggtttttcatttt 7995097  T
Q  186 gagatctgtgaaaccgatgaaccaat 211  Q
    |||||  |||||||||||||||||||    
T  7995098 gagattcgtgaaaccgatgaaccaat 7995123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 46993309 - 46993426
Alignment:
Q  94 aaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctg 193  Q
    ||||||||| | ||||||||||| |||||||||||   |||||||  ||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  46993309 aaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaatcgaaactgatctagtttggtttggttcatggtttttcatttcgagatccg 46993408  T
Q  194 tgaaaccgatgaaccaat 211  Q
    |||||||||| |||||||    
T  46993409 tgaaaccgattaaccaat 46993426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 48070614 - 48070772
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||| | || ||||||||| || ||||||||| ||||| ||||||||||| |||||||||| || ||||  ||||| |    
T  48070614 taggggtgtaagtggttcggacaaaatcgatcaaaccgaaaatctaaaccgaactaaaccaaaaaaatatccgaccttgtttgatttggttcaaaaccga 48070713  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     ||||||||| | |||||||||||||||| || |||||  | ||||| |||| ||||||    
T  48070714 accgaactaacctaaaccgatctagtttgattcggttctcggtttttaattttgagatc 48070772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 33 - 170
Target Start/End: Complemental strand, 3997128 - 3996991
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||  |||| || |||||||||| ||||  ||||| |    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaaccgaagaagaatccgactttgtttggtttggttcaaaaccga 3997029  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
     || ||| |||| ||||| | || |||||||| |||||    
T  3997028 acctaaccaatctaaaccaaccttgtttggttcggttc 3996991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 11727449 - 11727336
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    |||||||||||||||   |||||||||||||||||||||||||||||           ||||||||||||||||||||||||| || ||||| |||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaaccaatca----------aaaccgatctagtttggtttggttcgtggtttttcatttcga 11727360  T
Q  188 gatctgtgaaaccgatgaaccaat 211  Q
    |||| || |||||||| |||||||    
T  11727359 gatccgtaaaaccgataaaccaat 11727336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 46265457 - 46265353
Alignment:
Q  65 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    |||||||||||||||||||||||||||| ||||  ||||| |||||||  |||||||||  ||||| | |||||  |||| |||||||||| ||||||||    
T  46265457 aaaccgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtcgggttcggttcaaaaccgaaccgaatcaatctaaaccgatcttgtttggtt 46265358  T
Q  165 tggtt 169  Q
    |||||    
T  46265357 tggtt 46265353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 205
Target Start/End: Original strand, 2922986 - 2923125
Alignment:
Q  65 aaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    ||||||||||||||||| |||||||||| ||||  ||| ||||||||| ||||||||||  ||||| | |||||| |||| | ||||| || ||||| ||    
T  2922986 aaaccgaaagtccaaac-gaaccaaaccaaaaatgtattcaaccttgtatggttcggttcaaaaccgaaccgaaccaatctacaccgaccttgtttgatt 2923084  T
Q  165 tggttcatgattttttatttcgagatctgtgaaaccgatga 205  Q
     ||||| |||||||| |||| ||||||   |||||||||||    
T  2923085 cggttcttgatttttcattttgagatccaagaaaccgatga 2923125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 12013109 - 12013026
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggttt 124  Q
    ||||||||| |||||||||| |||||| ||||| |  |||  ||||| |||||||||| ||||| ||||| |||||||||||||    
T  12013109 taagtggtttgaataaaaccgatgaaatcgaaaatttaaattgaaccgaaccgaaaaagtatccgaccttatttggttcggttt 12013026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 27227089 - 27226938
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||| ||||| | |||||| |||||| | ||||||||||||||| |||||  ||||  ||||| | ||||| ||||| || |  || || |    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaacaaacttaaaaggtatcccatcttgtctggtttggatcaaagccga 27226990  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
     |||||| |||| ||||||| || |||||||| ||||| || ||||| ||||    
T  27226989 accgaaccaatctaaaccgaccttgtttggttcggttcttggtttttaattt 27226938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 12471911 - 12471855
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 97  Q
    ||||||||||| |||||||| ||||||  |||| |||||||||||| |||| |||||    
T  12471911 taagtggttcggataaaaccgatgaaattgaaaatccaaaccgaacaaaactgaaaa 12471855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 35738291 - 35738239
Alignment:
Q  45 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa 97  Q
    ||||||| |||||| | | ||||| |||||||||||||||||| |||||||||    
T  35738291 tggttcggataaaatcgacgaaacggaaagtccaaaccgaaccgaaccgaaaa 35738239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 46655514 - 46655693
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaa-aatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||  |||||||||| ||||| |||| |||| ||||| ||| |||| ||||||||| |||| ||||||| |||||  ||||||||||||||||||     
T  46655514 taggggtgcaagtggttcggataaatccaacgaaatcgaaaatccgaaccaaaccaaaccaaaaaaaatatccgaccttacttggttcggtttgaaaccg 46655613  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    |||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||    
T  46655614 atccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaat 46655693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 36 - 184
Target Start/End: Original strand, 44471020 - 44471168
Alignment:
Q  36 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| ||||||||||| | |||||| |||||| ||||| |||||||||||||||||||||||  ||||| ||||||||| ||||||||  ||||| | ||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  136 gaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
     ||| |||| ||||||||||||||||||| ||||| || ||||| ||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggtttttaattt 44471168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 208
Target Start/End: Complemental strand, 11503513 - 11503337
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| |||| ||||   |||||||| ||||||| ||||||||||||||||||||||| ||||  ||||| ||||||| ||||  ||||  |||||     
T  11503513 ataggggtgtaagcggttaagataaaaccgatgaaactgaaagtccaaaccgaaccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccg 11503414  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaacc 208  Q
    | |||||| |||||||||||||||  |||||||||||||  ||||||| |||| ||||||   ||||||||| ||||    
T  11503413 aaccgaaccaatcgaaaccgatcttatttggtttggttctcgatttttcattttgagatccaagaaaccgataaacc 11503337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 30554726 - 30554574
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacca 131  Q
    |||||||| ||| ||||||||| |||| | |||||||||||| |||||| ||| | ||||||||||| ||||| ||||||||| ||||||||  ||| |     
T  30554726 ataggggtgtaaatggttcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcg 30554627  T
Q  132 atccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    | |||||| |||| ||||||||||||||||||| |||||  ||||||| ||||    
T  30554626 aaccgaaccaatctaaaccgatctagtttggttcggttctcgatttttaattt 30554574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 46892612 - 46892701
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaacc 130  Q
    |||||||||||   |||||| |||||||  ||| | |||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  46892612 taagtggttcgggcaaaaccgatgaaacaaaaaattcaaaccgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaacc 46892701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 27524053 - 27524154
Alignment:
Q  69 cgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggt 168  Q
    |||||||||||||  ||||||||||||||  ||| | |||||||||||||||| |  ||||||| || ||| |||| ||| ||| || |||||||| |||    
T  27524053 cgaaagtccaaactaaaccaaaccgaaaaggtattcgaccttgtttggttcggatcaaaaccaaaccaaaccaatctaaatcgaccttgtttggttcggt 27524152  T
Q  169 tc 170  Q
    ||    
T  27524153 tc 27524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 184
Target Start/End: Complemental strand, 779629 - 779533
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttattt 184  Q
    ||||||||||| ||||||||||||||| ||||||||  ||||  |  ||||| || | ||||| ||||||||||||| ||||| || ||||| ||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggtttttaattt 779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 23307205 - 23307117
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaac 129  Q
    ||||||||||||| |||| | ||||||  ||||||| ||||| |||||||| |||| | ||| ||||||||  ||||||||||| ||||    
T  23307205 taagtggttcgaacaaaatcgatgaaattgaaagtctaaaccaaaccaaactgaaatagtattcaaccttgaatggttcggtttaaaac 23307117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 12937912 - 12937849
Alignment:
Q  35 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaa 98  Q
    ||||| |||||| |||| |||||| | |||||||||||| |||||||||||| ||| |||||||    
T  12937912 ggggtgtaagtgattcggataaaatcgatgaaaccgaaaatccaaaccgaactaaatcgaaaaa 12937849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 191
Target Start/End: Original strand, 26757593 - 26757751
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||| | | ||||||||||||| ||||| |||||| | ||| ||| ||||||| ||| | || ||||||||||  |||| ||||  |    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaatcaaacaaaatcgaaaaagtattcgacgttgtttggtttagtttaaaactga 26757692  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     |||||| || | ||| |||| ||| |||||| ||||| ||  |||| |||| ||||||    
T  26757693 accgaaccaacctaaatcgatatagattggttcggttcttggattttaattttgagatc 26757751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 44285605 - 44285691
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    ||||||||  |||||||||||||||   ||||||||||||||||||  ||||| | |||||| || | ||| |||| ||||||||||    
T  44285605 aaaccgaattaaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 23659401 - 23659501
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||  | |||| | |||||||||||| | |||||||  | ||| ||||||| |||| ||  |||||||||||||||  |||||||    
T  23659401 taggggtataagtggttcagacaaaatcgatgaaaccgaaaattcaaaccgttctaaatcgaaaaagtatctaattttgtttggttcggttcaaaaccaa 23659500  T
Q  133 t 133  Q
    |    
T  23659501 t 23659501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 31111413 - 31111591
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| |||||||||   | |||| ||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||  |    
T  31111413 taggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactga 31111512  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    || |||| ||| ||||||||||||||||||||||||||||| ||||| |||| ||||||  |||||||||| |||||||    
T  31111513 tctgaaccaattgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaat 31111591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 211
Target Start/End: Complemental strand, 13852453 - 13852277
Alignment:
Q  35 ggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatc 134  Q
    ||||| ||||| ||||| | |||||||| |||| ||||||||||||  ||| |||| | ||||||||||  || ||||||| |||||||||||||| |||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  135 cgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    | ||| |||| |||||||||||||||||||||||||||  ||||| |||| |||||| |||||||||||||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaat 13852277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 211
Target Start/End: Original strand, 4638207 - 4638332
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | |||||||| |||| | || ||| ||||||||||||||||||| ||||| ||||     
T  4638207 ccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaatactgatttagtttggtttggttcatggtttttcatttt 4638306  T
Q  186 gagatctgtgaaaccgatgaaccaat 211  Q
    |||||| |||||||||||||||||||    
T  4638307 gagatccgtgaaaccgatgaaccaat 4638332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 29109348 - 29109190
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||  ||||| |    
T  29109348 taggggtgtaagtggttcggacaaaactgatgaaactgaaaatccaaaccgaaccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccga 29109249  T
Q  133 tccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatc 191  Q
     |||||  || | ||||| |||||||||||||||||||  | ||||| |||| ||||||    
T  29109248 accgaagcaacctaaaccaatctagtttggtttggttctcggtttttaattttgagatc 29109190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 3920029 - 3919882
Alignment:
Q  45 tggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatc 144  Q
    ||||| ||| ||||||||||||||| ||| | ||||| ||| ||||||||||||  || | || |||||||||| ||||  ||||| | |||||| || |    
T  3920029 tggttggaacaaaaccaatgaaacctaaaattcaaactgaatcaaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaac 3919930  T
Q  145 gaaaccgatctagtttggtttggttcatgattttttatttcgagatct 192  Q
     ||||||||||||||||||||||||| | |||||| |||| |||||||    
T  3919929 taaaccgatctagtttggtttggttcttaatttttaattttgagatct 3919882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 33 - 152
Target Start/End: Complemental strand, 12894099 - 12893980
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaa 132  Q
    ||||||| | ||||||||  | |||||||| |||| | ||||||||||| |||||||||| ||||  ||||| ||||||||||||||||||  |||| ||    
T  12894099 taggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggttcaaaacaaa 12894000  T
Q  133 tccgaactaatcgaaaccga 152  Q
     |||||| |||| |||||||    
T  12893999 accgaaccaatctaaaccga 12893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 36009278 - 36009337
Alignment:
Q  152 atctagtttggtttggttcatgattttttatttcgagatctgtgaaaccgatgaaccaat 211  Q
    |||||||||||||||||||||| ||||| |||||||||||  ||||||||||||| ||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaat 36009337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 37630375 - 37630461
Alignment:
Q  78 aaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtt 164  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||  ||| | |||| ||| || | |||| ||||||||||||||    
T  37630375 aaaccgaaccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaacctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 208
Target Start/End: Original strand, 38607020 - 38607141
Alignment:
Q  86 ccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttc 185  Q
    |||||||||||| |||||| |||||||||| |||| ||  ||||| | |||||| |||| |||| || || |||||||| ||||| || ||||| ||||     
T  38607020 ccaaaccgaaaatatatccgaccttgtttg-ttcgattcaaaaccgaaccgaaccaatctaaactgaccttgtttggttcggttcttggtttttcatttt 38607118  T
Q  186 gagatctgtgaaaccgatgaacc 208  Q
    ||||||  | |||||||||||||    
T  38607119 gagatccataaaaccgatgaacc 38607141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 170
Target Start/End: Original strand, 5526225 - 5526353
Alignment:
Q  41 taagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaact 140  Q
    |||||||| || | |||||||| |||| ||||| ||||||   ||||||||||||||  ||||| ||||||||| ||||||||  ||||  |  |||||     
T  5526225 taagtggtccggacaaaaccaaagaaatcgaaaatccaaattaaaccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaacc 5526323  T
Q  141 aatcgaaaccgatctagtttggtttggttc 170  Q
    || | ||||||||||||||||||| |||||    
T  5526324 aacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 30907029 - 30906942
Alignment:
Q  32 ataggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttc 119  Q
    |||||||| ||||||||| | | |||| | |||||||||||| |||| || |||||||||| ||||| | | | ||||||||||||||    
T  30907029 ataggggtgtaagtggtttggacaaaatcgatgaaaccgaaaatccagactgaaccaaaccaaaaaagttttcgaccttgtttggttc 30906942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 1970 - 1852
Alignment:
Q  93 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcgagatct 192  Q
    |||||||||||| ||||||||||||||||||||||| | ||| |||| |||| |||| |||||| |||||||||||||||| ||||| ||||||||||      
T  1970 gaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaactgatctactttggtttggttcatggtttttaatttcgagattc 1871  T
Q  193 gtgaaaccgatgaaccaat 211  Q
    |||||||||||||||||||    
T  1870 gtgaaaccgatgaaccaat 1852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 7176662 - 7176529
Alignment:
Q  36 gggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatcc 135  Q
    |||| |||||| |||| | |||||| ||||||||||||   | ||||||||||| |||||||| ||||||||||||||||||| ||||  ||| | | ||    
T  7176662 gggtgtaagtgtttcggacaaaaccgatgaaaccgaaaactctaaccgaaccaacccgaaaaagtatccaaccttgtttggtttggttcaaaatcgaacc 7176563  T
Q  136 gaactaatcgaaaccgatctagtttggtttggtt 169  Q
    |||| || | ||||||||||||||||||| ||||    
T  7176562 gaaccaacctaaaccgatctagtttggttcggtt 7176529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 23301441 - 23301548
Alignment:
Q  63 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 162  Q
    ||||||||||| | ||||| ||||||||||||||||  || | ||||||||||||||||||  ||||| | |||||| || | |||| ||||||||||||    
T  23301441 tgaaaccgaaaattcaaactgaaccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttgg 23301540  T
Q  163 tttggttc 170  Q
    || |||||    
T  23301541 ttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 11971456 - 11971546
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||||| |||||||||   ||||||||||||||| |||||  | ||||||||| ||||||||||  ||||| | ||||||||||||||||    
T  11971456 taggggtgtaagtggtttagataaaaccaatgaaatcgaaaacctaaaccgaactaaaccgaaaatgtatccgatcttgtttggttcggtt 11971546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 191
Target Start/End: Original strand, 23300455 - 23300583
Alignment:
Q  63 tgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttgg 162  Q
    ||||||||||| | ||||||||||||||||||||||  |  | ||||||||||||||||||  ||||  | |||||| || | |||| |||||||||| |    
T  23300455 tgaaaccgaaaattcaaaccgaaccaaaccgaaaaagaaatcgaccttgtttggttcggttcaaaactgaaccgaaccaacctaaactgatctagtttag 23300554  T
Q  163 tttggttcatgattttttatttcgagatc 191  Q
    || |||||  | ||||| |||| ||||||    
T  23300555 ttcggttctcggtttttaattttgagatc 23300583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 88 - 190
Target Start/End: Complemental strand, 7551525 - 7551423
Alignment:
Q  88 aaaccgaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttcatgattttttatttcga 187  Q
    ||||||||||  |||||||| ||||||||||||| |  ||||||| |||||| |||| ||||||   | |||||| | ||||| |||||||| |||||||    
T  7551525 aaaccgaaaaggtatccaacattgtttggttcggatcaaaaccaaaccgaaccaatctaaaccggctttgtttgggtcggttcttgatttttcatttcga 7551426  T
Q  188 gat 190  Q
    |||    
T  7551425 gat 7551423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 9826747 - 9826868
Alignment:
Q  43 agtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaacc-ttgtttggttcggtttgaaaccaatccgaacta 141  Q
    ||||||||| | |||||| | |||||| ||| | ||||| ||||||||||| |||| ||||| ||| || ||||||||||||  ||||| | |||||| |    
T  9826747 agtggttcggagaaaaccgaagaaaccaaaaattcaaactgaaccaaaccg-aaaagtatccgacctttatttggttcggttgaaaaccgaaccgaacca 9826845  T
Q  142 atcgaaaccgatctagtttggtt 164  Q
    |   |||||||||||||||||||    
T  9826846 acataaaccgatctagtttggtt 9826868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 23585913 - 23585990
Alignment:
Q  93 gaaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaatcgaaaccgatctagtttggtttggttc 170  Q
    |||||| ||||| ||||||||| ||||||||  ||||| | || ||||||   |||||||| ||||||||||||||||    
T  23585913 gaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaactaacgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 33729 - 33819
Alignment:
Q  33 taggggtttaagtggttcgaataaaaccaatgaaaccgaaagtccaaaccgaaccaaaccgaaaaaatatccaaccttgtttggttcggtt 123  Q
    ||||||| ||||||||||| |||||||||||||||| |||||||||||  |||||||||||||||  ||||  ||||||| ||||| ||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggtt 33819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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