View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_551 (Length: 211)

Name: NF10855A_low_551
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_551
NF10855A_low_551
[»] chr1 (8 HSPs)
chr1 (3-174)||(17560737-17560908)
chr1 (7-158)||(4366475-4366626)
chr1 (10-137)||(21855384-21855511)
chr1 (17-150)||(39379049-39379182)
chr1 (20-148)||(4570879-4571007)
chr1 (9-137)||(10218926-10219054)
chr1 (73-159)||(4014944-4015030)
chr1 (10-118)||(4016792-4016900)
[»] chr7 (17 HSPs)
chr7 (8-159)||(29874450-29874602)
chr7 (9-150)||(29859395-29859536)
chr7 (6-159)||(29921972-29922125)
chr7 (17-159)||(29867188-29867327)
chr7 (17-159)||(29881205-29881347)
chr7 (37-152)||(29454089-29454204)
chr7 (20-118)||(29445676-29445774)
chr7 (68-159)||(29430980-29431071)
chr7 (68-152)||(14076678-14076762)
chr7 (68-152)||(14386706-14386790)
chr7 (73-152)||(660833-660912)
chr7 (92-160)||(19351047-19351115)
chr7 (67-118)||(29106813-29106864)
chr7 (67-118)||(29899373-29899424)
chr7 (20-129)||(29895418-29895530)
chr7 (5-114)||(29920067-29920176)
chr7 (92-152)||(18514773-18514833)
[»] chr4 (8 HSPs)
chr4 (17-149)||(3557675-3557807)
chr4 (10-149)||(3565686-3565825)
chr4 (17-159)||(3560937-3561079)
chr4 (4-150)||(1686273-1686419)
chr4 (68-138)||(53774840-53774910)
chr4 (68-152)||(11970968-11971052)
chr4 (76-137)||(53430100-53430161)
chr4 (68-157)||(11981664-11981753)
[»] chr3 (1 HSPs)
chr3 (4-159)||(3625670-3625825)
[»] chr5 (2 HSPs)
chr5 (10-137)||(24330900-24331027)
chr5 (7-136)||(29597554-29597683)
[»] chr2 (1 HSPs)
chr2 (92-159)||(14514924-14514991)
[»] chr6 (3 HSPs)
chr6 (68-139)||(6921349-6921420)
chr6 (73-150)||(6935206-6935283)
chr6 (68-152)||(20770650-20770734)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 17560908 - 17560737
Alignment:
Q  3 catagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggtt 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  17560908 catagaaccaacttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggtt 17560809  T
Q  103 gaagattcttggactccattccttagaattagttataacgatcttcaaattgattatagctatgatggttat 174  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17560808 gaagattcttggacaccattccttataattagttataacgatcttcaaattgattatagctatgatggttat 17560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 4366626 - 4366475
Alignment:
Q  7 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 106  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||  ||||||| |||  ||||| ||| |||||||  |||||||||| ||||||||||    
T  4366626 gaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaag 4366527  T
Q  107 attcttggactccattccttagaattagttataacgatcttcaaattgatta 158  Q
    | |||||||||||||| |||| | |||||||  |  |||||||||| |||||    
T  4366526 agtcttggactccatttcttaaagttagttaccagaatcttcaaatagatta 4366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 21855511 - 21855384
Alignment:
Q  10 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 109  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  21855511 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 21855412  T
Q  110 cttggactccattccttagaattagtta 137  Q
    ||||||||| | |||||| | |||||||    
T  21855411 cttggactcaactccttaaagttagtta 21855384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 39379182 - 39379049
Alignment:
Q  17 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    ||||||||||||| ||||||||||||||||||||| ||||||   |||  |||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  117 tccattccttagaattagttataacgatcttcaa 150  Q
    || ||| |||| ||| |||||| | |||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 4570879 - 4571007
Alignment:
Q  20 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactcc 119  Q
    |||||||||| | ||| |||||||||||||||    ||| |||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  4570879 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 4570978  T
Q  120 attccttagaattagttataacgatcttc 148  Q
    ||| |||| |||||||||||  |||||||    
T  4570979 attgcttaaaattagttatagtgatcttc 4571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 10218926 - 10219054
Alignment:
Q  9 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 108  Q
    |||||||||||||||||||||||  || ||||||||||||| |    |||||||||  ||||| ||| |||||||  |||||||||||||| ||||||||    
T  10218926 accaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagat 10219025  T
Q  109 tcttggactccattccttagaattagtta 137  Q
    |||||||||| ||| |||| |||||||||    
T  10219026 tcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 4015030 - 4014944
Alignment:
Q  73 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||  | ||||||| ||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattat 4014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 4016900 - 4016792
Alignment:
Q  10 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 109  Q
    ||||||||| |||||||||||| ||| |||||||||||||||   || | | ||| | ||||   ||| |||||  ||||||||||||| ||||||||||    
T  4016900 ccaactattagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagatt 4016801  T
Q  110 cttggactc 118  Q
    | |||||||    
T  4016800 cctggactc 4016792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 29874450 - 29874602
Alignment:
Q  8 aaccaactattggtgtgttgggg-gactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 106  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||  ||||||||||  |||||||||||||||||||||    
T  29874450 aaccaaatataggtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaag 29874549  T
Q  107 attcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    |||||||||||||||| |||| |||||||||| |  |||||||||||||||||    
T  29874550 attcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 29859395 - 29859536
Alignment:
Q  9 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 108  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||  ||||| ||||||||| |  ||||||||||||| |||||||||    
T  29859395 accaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagat 29859494  T
Q  109 tcttggactccattccttagaattagttataacgatcttcaa 150  Q
    |||||||| ||||| |||| |||||||||| || ||||||||    
T  29859495 tcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 29922125 - 29921972
Alignment:
Q  6 agaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaa 105  Q
    |||||||||  ||||||||||||||| ||| |||||||||||||||  |||||| ||||  ||||| |||||||||||  ||||||||||||||| ||||    
T  29922125 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa 29922026  T
Q  106 gattcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    ||||||||| ||| ||||||||||||||||||| |  |||||| ||| ||||||    
T  29922025 gattcttggtctcaattccttagaattagttatcaaaatcttctaatagattat 29921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 29867188 - 29867327
Alignment:
Q  17 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    ||||||||||||||||||| |||||||||||||||  |   |||||||  |||||  ||||||||||  |||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  117 tccattccttagaattagttataacgatcttcaaattgattat 159  Q
    || ||||||||||||||||||  |  |||||||||||||||||    
T  29867285 tcaattccttagaattagttaccataatcttcaaattgattat 29867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 29881205 - 29881347
Alignment:
Q  17 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    |||||||||||| |||||| ||||| |||| |||| ||||||||||||  |||||  || | |||||  |||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  117 tccattccttagaattagttataacgatcttcaaattgattat 159  Q
    || ||||||||||||||||||  |   ||||||||||||||||    
T  29881305 tcaattccttagaattagttaccatagtcttcaaattgattat 29881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 29454204 - 29454089
Alignment:
Q  37 ctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtt 136  Q
    |||||||||||||||  ||||||||||  |||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  29454204 ctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T
Q  137 ataacgatcttcaaat 152  Q
    || | |||||||||||    
T  29454104 atcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 29445774 - 29445676
Alignment:
Q  20 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 118  Q
    |||||||||||| ||  ||||||| |||||||  ||||||||||| ||||||  ||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactc 29445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    |||| ||||||||||   ||| ||||||||||| | ||||||||||||| | |||||||| |||||||||| | ||||||||||| ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 14076678 - 14076762
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 14386706 - 14386790
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| |||| |||||||||| |  ||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 660912 - 660833
Alignment:
Q  73 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    |||||||||||  ||||| ||||| | |||||||| |||||||||| |||||||| |||||||||| |  ||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaat 660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 19351115 - 19351047
Alignment:
Q  92 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattata 160  Q
    ||||||| ||||| || ||||||||||||||||| | |||||||| | | |||||||| ||||||||||    
T  19351115 aatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattata 19351047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 29106813 - 29106864
Alignment:
Q  67 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 118  Q
    ||||| ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  29106813 gattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 29899373 - 29899424
Alignment:
Q  67 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 118  Q
    ||||| |||||||||||  |||||||||||||||||||||| || |||||||    
T  29899373 gattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 29895418 - 29895530
Alignment:
Q  20 gtgtgttgggggactgtctttgtttttcttatcgtt---acaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    |||| ||||| | |||||||||||||||||||  ||   ||||||||| ||| || ||| |||||||  |||||||||||||| | ||||| |||||||     
T  29895418 gtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttgggatagaagagtcttggag 29895517  T
Q  117 tccattccttaga 129  Q
    || ||| ||||||    
T  29895518 tcaattacttaga 29895530  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 29920176 - 29920067
Alignment:
Q  5 tagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttga 104  Q
    ||||||||||| ||||||||||||| | ||| |||| || |||||||  ||||||||||| ||| ||  | |||||| |  |||||||||| ||  ||||    
T  29920176 tagaaccaactcttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttga 29920077  T
Q  105 agattcttgg 114  Q
    | ||||||||    
T  29920076 atattcttgg 29920067  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 18514833 - 18514773
Alignment:
Q  92 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    ||||||| |||||| | |||||||||| |||||||| |||||||||||   ||||||||||    
T  18514833 aatttggagttgaaaactcttggactcaattccttaaaattagttatatgaatcttcaaat 18514773  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 3557675 - 3557807
Alignment:
Q  17 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  117 tccattccttagaattagttataacgatcttca 149  Q
    || ||| |||| |||||||||| | ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttca 3557807  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 3565686 - 3565825
Alignment:
Q  10 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 109  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||| ||| ||| ||||||  ||||||||||  ||||| |||||||||||||||| |    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  110 cttggactccattccttagaattagttataacgatcttca 149  Q
    ||||||||| ||| |||| |||||||||| | ||||||||    
T  3565786 cttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 3561079 - 3560937
Alignment:
Q  17 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 116  Q
    ||||||| |||||||| || |||||||||||||||  ||||||||||| ||||||  |||| |||||  |||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  117 tccattccttagaattagttataacgatcttcaaattgattat 159  Q
    || ||| |||| |||||||||| | ||||||||| | ||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttcaattagattat 3560937  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 1686419 - 1686273
Alignment:
Q  4 atagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttg 103  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||  ||| |||   | | || |  ||||||||||  ||||| ||||||| ||||    
T  1686419 atagagccaactgttggtgtgttgggggactgcctttgtttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttg 1686320  T
Q  104 aagattcttggactccattccttagaattagttataacgatcttcaa 150  Q
    | || |||||||||| ||| |||| |  ||||||| | |||||||||    
T  1686319 acgagtcttggactcaatttcttaaatatagttattatgatcttcaa 1686273  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 53774840 - 53774910
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttat 138  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| |||||||| ||||||||||    
T  53774840 attttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 11971052 - 11970968
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    |||| |||||||||||  ||||| ||||||| || ||||| |||||||||| ||| ||||||||||||||| |  ||||||||||    
T  11971052 attttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaat 11970968  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  76 atatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagtta 137  Q
    ||||||||  ||||||||| |||||  |||||||||||||||| |||||||| |||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 157
Target Start/End: Complemental strand, 11981753 - 11981664
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgatt 157  Q
    |||| |||||||||||  ||||| ||||||| || ||||| || ||||||| ||| |||| ||||||||||    |||||||||||||||    
T  11981753 attttgttatatggcaaatgaaggaatttggagtggaagagtcctggactcgatttcttaaaattagttatcttaatcttcaaattgatt 11981664  T

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Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 3625670 - 3625825
Alignment:
Q  4 atagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttg 103  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||||  |||||||| || | || |  ||||||||||  ||||||||||||||||||    
T  3625670 atagaaccaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttg 3625769  T
Q  104 aagattcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    |||| |||||||||| ||| |||| |||||||||| |  |||||||| | ||||||    
T  3625770 aagagtcttggactcaatttcttaaaattagttatcaaaatcttcaattagattat 3625825  T

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Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 24331027 - 24330900
Alignment:
Q  10 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 109  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  24331027 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 24330928  T
Q  110 cttggactccattccttagaattagtta 137  Q
    ||||||||| | |||||| | |||||||    
T  24330927 cttggactcaactccttaaagttagtta 24330900  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 29597683 - 29597554
Alignment:
Q  7 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 106  Q
    ||||||||||||| ||| |||  |||| | |||||||||||| | | || ||||||||   |||| |||||||||||  |||   ||||||| ||||||     
T  29597683 gaaccaactattgctgttttgctggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaac 29597584  T
Q  107 attcttggactccattccttagaattagtt 136  Q
    | |||||||||| |||||||| ||||||||    
T  29597583 aatcttggactcaattccttaaaattagtt 29597554  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 14514924 - 14514991
Alignment:
Q  92 aatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaattgattat 159  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||   |||||||||| ||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttata 139  Q
    |||| ||||| |||||  ||||| ||||||| |||||||| |||||||||| |||||||| |||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 6935283 - 6935206
Alignment:
Q  73 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaa 150  Q
    ||||| |||||  ||||| ||||||| ||| |||| |||||||||  |||||||| ||||||||||| | ||||||||    
T  6935283 gttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattccttaaaattagttataccaatcttcaa 6935206  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Original strand, 20770650 - 20770734
Alignment:
Q  68 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccttagaattagttataacgatcttcaaat 152  Q
    |||| |||||||||||  ||||| |||||||  ||||||| || |||| || |||||||| |||||||||| |  ||||||||||    
T  20770650 attttgttatatggcaaatgaaggaatttggaattgaagagtcatggattcaattccttaaaattagttatcataatcttcaaat 20770734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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