View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_552 (Length: 211)
Name: NF10855A_low_552
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_552 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 31998088 - 31997911
Alignment:
| Q |
19 |
aaataggtcaaaagactttgattnnnnnnnttaaaatccaattcttatgcagagccagaaagataaacaaaccaactgttaccatgaaatttagcagcta |
118 |
Q |
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| T |
31998088 |
aaataggtcaaaagacttcgattaaaaaaattaaaatccaattcttatgcagagccagaaagataaacaaaccaactgtgaccaagaaatttagcagcta |
31997989 |
T |
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| Q |
119 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgaggcat |
196 |
Q |
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| T |
31997988 |
atatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacgtccacgaggcat |
31997911 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 15843120 - 15843038
Alignment:
| Q |
111 |
agcagctaatatacttccttccagaggcacatttttccctccagaaagaccacctcctattatgcaagtccacatccacgagg |
193 |
Q |
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| T |
15843120 |
agcaggtaatgtacttccctccagaggcacattgccccctccaacaagaccatctcctactatgcaagtccacatccacgagg |
15843038 |
T |
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