View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_553 (Length: 211)

Name: NF10855A_low_553
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_553
NF10855A_low_553
[»] scaffold0016 (1 HSPs)
scaffold0016 (26-211)||(53818-54003)
[»] chr4 (2 HSPs)
chr4 (114-177)||(15707358-15707421)
chr4 (172-211)||(15707440-15707479)
[»] scaffold0642 (2 HSPs)
scaffold0642 (114-177)||(4102-4165)
scaffold0642 (172-211)||(4184-4223)
[»] scaffold0345 (2 HSPs)
scaffold0345 (114-177)||(14014-14077)
scaffold0345 (172-211)||(14096-14135)
[»] scaffold0105 (2 HSPs)
scaffold0105 (114-177)||(24904-24967)
scaffold0105 (172-211)||(24846-24885)
[»] scaffold1526 (2 HSPs)
scaffold1526 (114-169)||(1249-1304)
scaffold1526 (172-211)||(1178-1217)
[»] chr8 (2 HSPs)
chr8 (114-177)||(44495504-44495567)
chr8 (175-211)||(44495589-44495625)
[»] chr2 (2 HSPs)
chr2 (114-169)||(3378229-3378284)
chr2 (172-211)||(3378316-3378355)
[»] chr6 (1 HSPs)
chr6 (29-113)||(21221835-21221922)


Alignment Details
Target: scaffold0016 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 26 - 211
Target Start/End: Complemental strand, 54003 - 53818
Alignment:
Q  26 gtactgaccaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttactcctaatagtgatacaatacttactttctct 125  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54003 gtactgacaaaattaccaaagaggatcaaaacatttaagataggaataatttgtggctgatgatgttgctcctaatagtgatacaatacttactttctct 53904  T
Q  126 ctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  53903 ctaacatcattccaatccggtccttcttctctcacactctattcatacccatccatgaattcactccagagcggtgagtggcttcg 53818  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 15707358 - 15707421
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707358 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 15707421  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 15707440 - 15707479
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  15707440 acccatccatgaattcactccagatcggtgagtggcttcg 15707479  T

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Target: scaffold0642 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 4102 - 4165
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4102 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 4165  T

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Target: scaffold0642; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 4184 - 4223
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  4184 acccatccatgaattcactccagatcggtgagtggcttcg 4223  T

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Target: scaffold0345 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 14014 - 14077
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14014 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 14077  T

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Target: scaffold0345; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 14096 - 14135
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  14096 acccatccatgaattcactccagatcggtgagtggcttcg 14135  T

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Target: scaffold0105 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 24967 - 24904
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24967 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 24904  T

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Target: scaffold0105; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 24885 - 24846
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  24885 acccatccatgaattcactccagatcggtgagtggcttcg 24846  T

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Target: scaffold1526 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 1304 - 1249
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1304 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 1249  T

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Target: scaffold1526; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 1217 - 1178
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  1217 acccatccatgaattcactccagatcggtgagtggcttcg 1178  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 44495504 - 44495567
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 177  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44495504 cttactttctctctaacatcattccaatccggttcttcttctctcacactccattcatacccat 44495567  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 44495589 - 44495625
Alignment:
Q  175 catccatgaattcactctagagcggtgagtggcttcg 211  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  44495589 catccatgaattcactccagatcggtgagtggcttcg 44495625  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 3378229 - 3378284
Alignment:
Q  114 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378229 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattc 3378284  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 3378316 - 3378355
Alignment:
Q  172 acccatccatgaattcactctagagcggtgagtggcttcg 211  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  3378316 acccatccatgaattcactccagatcggtgagtggcttcg 3378355  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 21221835 - 21221922
Alignment:
Q  29 ctgaccaaattaccaaagaggatcaa---aacatttaagataggaataatttgtggctgatgatgttactcctaatagtgatacaata 113  Q
    |||| |||||||||||||||||||||   |||| | || |||||||| || |||||||||||||||| ||||||||||||||| ||||    
T  21221835 ctgaacaaattaccaaagaggatcaagaaaacactgaaaataggaattatctgtggctgatgatgttgctcctaatagtgatataata 21221922  T

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