View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10855A_low_554 (Length: 210)
Name: NF10855A_low_554
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_554 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 7839613 - 7839787
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7839613 |
cactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
7839712 |
T |
|
| Q |
120 |
gctctttctttgatgtctaacatcagaagcttccaccttatagaatataacaaaaacagttttccctttcttctc |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7839713 |
gctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaacagttttccctttcatctc |
7839787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 7762944 - 7763043
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgttgaatcattgcaatttcata |
119 |
Q |
| |
|
|||| ||||||||||| | | |||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
7762944 |
cactgagagcacaaacacgattcaaagccaacctccatgctttcaccttctccgattcctttccaaatctattttcatgtttcatcattgcaatttcata |
7763043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 7755491 - 7755571
Alignment:
| Q |
20 |
cactaagagcacaaactctttccaaagcagacctccatttcttcaccttctccgattcctttccaaatctcttttcatgtt |
100 |
Q |
| |
|
|||| ||||||||||||| | |||||| || ||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7755491 |
cactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctcttttcatgtt |
7755571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University