View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_556 (Length: 210)
Name: NF10855A_low_556
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_556 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 5e-98; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 4821954 - 4821758
Alignment:
| Q |
1 |
aggctgcaaagcttctttttcttcttatcacgagttcataatcagattgcttattttccaaaagtctagccatggagatataataataaataacaagttt |
100 |
Q |
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| T |
4821954 |
aggctgcaaagcttcattttcttcttatcacgagttcataatcagattgcttattttccaaaagtctagccacggagatataataataaataacaagttt |
4821855 |
T |
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| Q |
101 |
aattttgatacaccgtcaaagcaaacttttatacggctaaacaatcacaagtcacaaaacatcgttaattacgcaagaacttcatatacgtttcttc |
197 |
Q |
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| T |
4821854 |
aattttgatacaccatcaaagcaaacttttattcggctaaacaatcacaagtcacaaaacatcgttaattacgcaagaacttcatatacgtttcttc |
4821758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 4811893 - 4811820
Alignment:
| Q |
57 |
tccaaaagtctagccatggagatataataataaataacaagtttaattttgatacaccgtcaaagcaaactttt |
130 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4811893 |
tccaaaagtcaagccatggaaatataataataaataacaagtttaattttgatacaccgtcaaagtaaactttt |
4811820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4811972 - 4811922
Alignment:
| Q |
1 |
aggctgcaaagcttctttttcttcttatcacgagttcataatcagattgctt |
52 |
Q |
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| T |
4811972 |
aggctgcaaagcttctttttcttcttatcacgagttca-aatcagattgctt |
4811922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 4865435 - 4865385
Alignment:
| Q |
1 |
aggctgcaaagcttctttttcttcttatcacgagttcataatcagattgctt |
52 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4865435 |
aggctgcaaagcttcttttt-ttcttatcacgagttcataatcagattgctt |
4865385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 4865356 - 4865303
Alignment:
| Q |
57 |
tccaaaagtctagccatggagatataataataaataacaagtttaattttgata |
110 |
Q |
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|||| |||||| |||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4865356 |
tccacaagtctggccatggaaatataataataaataacgagtttaattttgata |
4865303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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