View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_568 (Length: 206)

Name: NF10855A_low_568
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_568
NF10855A_low_568
[»] chr2 (18 HSPs)
chr2 (16-185)||(44624829-44624998)
chr2 (16-165)||(44615456-44615605)
chr2 (16-176)||(39153106-39153266)
chr2 (24-152)||(39472763-39472891)
chr2 (21-176)||(39387469-39387624)
chr2 (16-152)||(39138693-39138826)
chr2 (16-149)||(39371164-39371297)
chr2 (16-176)||(39216704-39216864)
chr2 (16-176)||(39396627-39396787)
chr2 (22-151)||(39205742-39205871)
chr2 (21-176)||(39196485-39196640)
chr2 (21-176)||(39413004-39413159)
chr2 (22-144)||(44895114-44895236)
chr2 (16-149)||(39380496-39380629)
chr2 (25-151)||(39478294-39478420)
chr2 (21-176)||(39421161-39421313)
chr2 (22-151)||(39223764-39223893)
chr2 (48-167)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (16-152)||(44730162-44730298)
chr8 (16-177)||(44949869-44950030)
chr8 (16-174)||(45343012-45343170)
[»] chr5 (2 HSPs)
chr5 (21-177)||(17060698-17060854)
chr5 (21-176)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (16-177)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (16-152)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (22-79)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 44624829 - 44624998
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44624829 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgat 44624928  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctggatacaag 185  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  44624929 ttatggattgcatacttattttgatgaagatgaagtctaaaagctttttggatctgttgctggatacaag 44624998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 44615456 - 44615605
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||    
T  44615456 gagatgaagcgttgaagctagcgtgtgagttgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgat 44615555  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttg 165  Q
    ||| ||||||  || ||| |||||||||||||||||| | ||| ||||||    
T  44615556 ttacggattggttaattactttgatgaagatgaagtcttcaagatttttg 44615605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 39153106 - 39153266
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| ||||||||||| || || | ||| ||||||||||| || ||||||||||||||||||||||||| |||||| || |||||| || ||||||||||    
T  39153106 gagaagaagcattgaaactcgcacatgatttgaaagctaaaataaaagaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgat 39153205  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
    ||||||||||  ||||| ||| ||| ||||||||||| |  ||||||||| || |||||||    
T  39153206 ttatggattggttacttctttcgataaagatgaagtcttggagctttttgcatttgttgct 39153266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 39472891 - 39472763
Alignment:
Q  24 gcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggat 123  Q
    ||||||||||| || | ||| ||||||| ||||||||||||||||||||||||||||||||  ||||| || |||||| || ||||||| ||||||| ||    
T  39472891 gcattgaagctcgcacttgatttgaaagttaacatgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaat 39472792  T
Q  124 tgcatacttattttgatgaagatgaagtc 152  Q
    ||| ||||| |||||||||||||||||||    
T  39472791 tgcttacttcttttgatgaagatgaagtc 39472763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 39387624 - 39387469
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||  ||||| || |||||  || ||||||| |||||||    
T  39387624 gaagcattgaagctagcgcgtgatttaaaagctaacatgaaagaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatg 39387525  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
    |  ||| |  ||||||||| |||||||||||  |  ||||||||| || |||||||    
T  39387524 ggctgcttgattattttgacgaagatgaagttttggagctttttgcatttgttgct 39387469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 39138693 - 39138826
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| ||||||||||||||||| | | |  |||||||||||||||||   ||||||||||||||| ||| ||||||||| |||||| ||||||||||  |    
T  39138693 gagaagaagcattgaagctagcacttaatctgaaagctaacatgaaa---aatactgaaaattctctggtggttctcggttttctactgattttgtcagt 39138789  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtc 152  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  39138790 ttatgaattgcttacttattttgatgaagatgaagtc 39138826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 39371164 - 39371297
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||||||||||||||||||||| | |||  ||||||| |||||||||||||||| | ||||| |||||| |||||| || ||||||||| ||||||| |     
T  39371164 gagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaaaaatcctttggtggttcttggttttctattgcttttgtcaaa 39371263  T
Q  116 ttatggattgcatacttattttgatgaagatgaa 149  Q
    ||||||||||  ||||| ||||||||||||||||    
T  39371264 ttatggattggttacttcttttgatgaagatgaa 39371297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 39216704 - 39216864
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| |||||||||||||||||   ||| |||||| |||||||||  ||||||||| |||||||||||| ||||||||| |||||  || ||||||| ||    
T  39216704 gagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggtggttctcggttttcttctgcttttgtcaat 39216803  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
    ||||||||||  ||||| ||||| ||||||||||||  |  ||||||||| ||||||||||    
T  39216804 ttatggattggttacttcttttggtgaagatgaagttttggagctttttgcatctgttgct 39216864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 39396787 - 39396627
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| |||||| |||||||||| | ||| |||| |||| |||| | ||||||||||||||||||||||| |||||| || ||| | ||| ||||||| ||    
T  39396787 gagaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaat 39396688  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
    ||||||||||| ||||| ||| ||||||||||||||  |  ||||||||| ||| ||||||    
T  39396687 ttatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgct 39396627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 39205871 - 39205742
Alignment:
Q  22 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 121  Q
    ||||||||||||||||   ||| ||||||||||| |||||||||||||||||||||||| ||| |||||| || |||||| || ||||||||||||||      
T  39205871 aagcattgaagctagcatttgacttgaaagctaagatgaaagaaaatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataa 39205772  T
Q  122 attgcatacttattttgatgaagatgaagt 151  Q
    ||||| |  || ||||||| ||||||||||    
T  39205771 attgcttgattcttttgataaagatgaagt 39205742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 39196640 - 39196485
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    |||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||||||||| |||||| || |||||  || ||||||| ||||||     
T  39196640 gaagcattgaagctagcatttgatttgaaagctaacatgaatgacaatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttata 39196541  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  39196540 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 39196485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 39413159 - 39413004
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    ||||||||||||||||| | ||| |||||||||||| ||||||||||||| ||||| ||||||| ||||||  | ||||| ||| |||||||  ||| ||    
T  39413159 gaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgttgcttttgtcagtttgtg 39413060  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
    |||||  ||||| ||| |||||||||||| || |  ||||||||| || |||||||    
T  39413059 gattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgct 39413004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 44895236 - 44895114
Alignment:
Q  22 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 121  Q
    |||||||||||||||| | | | || ||||||||||| |||| |||||||||||||||||||| |||||| || |||||| || ||||||| ||||||||    
T  44895236 aagcattgaagctagcacataaattcaaagctaacataaaaggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatgg 44895137  T
Q  122 attgcatacttattttgatgaag 144  Q
    ||||  ||||| ||| |||||||    
T  44895136 attgattacttctttcgatgaag 44895114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 39380629 - 39380496
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| |||||| ||| |||||| | ||| ||||||||| |||| | ||| ||||||||| ||||| ||| |||||| ||||||||| || ||||||| ||    
T  39380629 gagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattctgtggcggttcttggatttctactgcttttgtcaat 39380530  T
Q  116 ttatggattgcatacttattttgatgaagatgaa 149  Q
    ||||||||||| ||||| ||| ||||||||||||    
T  39380529 ttatggattgcttacttctttcgatgaagatgaa 39380496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 39478420 - 39478294
Alignment:
Q  25 cattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggatt 124  Q
    ||||||||||||| | ||| ||||||||| |||| | |||||||||||||||||||| ||  ||||| |  |||||| || ||||||| |||||||||||    
T  39478420 cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt 39478321  T
Q  125 gcatacttattttgatgaagatgaagt 151  Q
    || ||||| ||| || |||| ||||||    
T  39478320 gcttacttctttcgaagaaggtgaagt 39478294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 39421313 - 39421161
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    |||||||||||||| || | ||| ||||||||||| ||| |||||||||||||||||  |||   ||||||||| |||||| || ||||||| |||||      
T  39421313 gaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataattt---ggttctcggttttctactgcttttgtcaatttacc 39421217  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
     ||||  |||||||||  |||||||||||||  |  ||||||||| || |||||||    
T  39421216 aattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgct 39421161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 39223764 - 39223893
Alignment:
Q  22 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatgg 121  Q
    ||||||||||||||||   ||| || ||||  ||||||||||| ||||||||||| ||||||| |||||| || |||||  || ||||||| ||||||      
T  39223764 aagcattgaagctagcatatgatttaaaagaaaacatgaaagacaatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataa 39223863  T
Q  122 attgcatacttattttgatgaagatgaagt 151  Q
    ||||| |  ||  |||||||||||||||||    
T  39223864 attgcttgattcatttgatgaagatgaagt 39223893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 39188857 - 39188738
Alignment:
Q  48 aaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaagatg 147  Q
    |||||||||||||||||||||| || ||||||||||| |||||| || |||||| |  || | || |||||||| |||  | ||| |||  |||||||||    
T  39188857 aaagctaacatgaaagaaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatg 39188758  T
Q  148 aagtcataaagctttttgga 167  Q
    | ||  ||||||||||||||    
T  39188757 atgttttaaagctttttgga 39188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 44730162 - 44730298
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  44730162 gagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgattttgacgat 44730261  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtc 152  Q
    |||| |||||| |||||| ||||||| ||||||||||    
T  44730262 ttatagattgcttacttactttgatggagatgaagtc 44730298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 44950030 - 44949869
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  44950030 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 44949931  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 177  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  44949930 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 44949869  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 174
Target Start/End: Original strand, 45343012 - 45343170
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| |||||||| |||||||| | |||||||||||||||| |||||| |||||||||||| || ||| | ||||| || |||||| |||||||||| ||    
T  45343012 gagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaatactgaaaaatcattgaacgttcttggttttctactgattttgtcaat 45343111  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttg 174  Q
    | ||| ||||| ||||| ||||||| ||||||||||| |  ||||||||| ||||||||    
T  45343112 tcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatctgttg 45343170  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 17060698 - 17060854
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    ||||| ||||||||||| | |||||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||| ||||| |||||| ||||||    
T  17060698 gaagctttgaagctagcacatgagttgaaagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatg 17060797  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 177  Q
    |||||  ||||||||||||| ||||||||||| |  | ||||||| |||||||||||    
T  17060798 gattgtttacttattttgatcaagatgaagtcttggatctttttgcatctgttgctg 17060854  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 21 - 176
Target Start/End: Original strand, 33562341 - 33562496
Alignment:
Q  21 gaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgatttatg 120  Q
    |||||||||||||||||   ||| ||||||||||||||||||||||||||||||  || ||||| |||||| || |||||  || ||||||| ||||||     
T  33562341 gaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaatactgaattttttttggcggttcttggttttctgatgcttttgtcaatttata 33562440  T
Q  121 gattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgct 176  Q
     ||||| |  || ||||||||||||||||||  |  ||||||||| || |||||||    
T  33562441 aattgcttgattcttttgatgaagatgaagttttggagctttttgcatttgttgct 33562496  T

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Target: scaffold0283 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 6010 - 5849
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||||||||| ||||||||||| | ||||||||||  ||| || |||||||||||| |||||||||||||||||||| |||||||||||||| |  ||||    
T  6010 gagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctcagatttctattgattataacgat 5911  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtcataaagctttttggatctgttgctg 177  Q
    ||||||||||| |||||| ||||||  |||||| |||   ||||||| || |||||||||||    
T  5910 ttatggattgcttacttactttgatcgagatgatgtctctaagctttatgcatctgttgctg 5849  T

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Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 19808950 - 19809083
Alignment:
Q  16 gagatgaagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattctttggaggttctcggatttctattgattttgtcgat 115  Q
    |||| ||| ||||||||||||| | ||| ||||||||||||||||||   | ||||||||||||| ||| |||||| || |||||| || |||||||  |    
T  19808950 gagaagaaacattgaagctagcacttgatttgaaagctaacatgaaa---agtactgaaaattctctggtggttcttggttttctactgcttttgtcagt 19809046  T
Q  116 ttatggattgcatacttattttgatgaagatgaagtc 152  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19809047 ttatgaattgcttacttattttgatgaagatgaagtc 19809083  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 16114420 - 16114477
Alignment:
Q  22 aagcattgaagctagcgcgtgagttgaaagctaacatgaaagaaaatactgaaaattc 79  Q
    ||||||||||||||||||| || ||||||||| |||||| ||| |||||| |||||||    
T  16114420 aagcattgaagctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattc 16114477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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