View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10855A_low_57 (Length: 405)
Name: NF10855A_low_57
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10855A_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 48 - 400
Target Start/End: Complemental strand, 39956731 - 39956376
Alignment:
| Q |
48 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgccctaaccgtaacctgtttctg |
147 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| |
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| T |
39956731 |
gaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctg |
39956632 |
T |
|
| Q |
148 |
ccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
247 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956631 |
ccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagcc |
39956532 |
T |
|
| Q |
248 |
atgttacgatgaag---atgagtgaagagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
344 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39956531 |
atgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagtgtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttg |
39956432 |
T |
|
| Q |
345 |
acatgctgtgtctatttatagtaaaggggtttggagagtttagagtggtttggttt |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39956431 |
acatgctgtgtctatttatagtaaaggggtttcgagagtttagagtggtttggttt |
39956376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 39941089 - 39940766
Alignment:
| Q |
9 |
agaagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39941089 |
agaagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgatagcat |
39940990 |
T |
|
| Q |
109 |
gatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttca |
208 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
39940989 |
gatactcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaatctcatcaagttgttca |
39940890 |
T |
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| Q |
209 |
tcggaggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgtttggtttttgttttgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
39940889 |
tcggaggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgtttggttttgattttgc |
39940790 |
T |
|
| Q |
308 |
gattgttaatgaagtcgctttcgt |
331 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
39940789 |
gattgttaatgaagtcgctttcgt |
39940766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 28750689 - 28750890
Alignment:
| Q |
9 |
agaagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacat |
108 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||| ||||||||| || || ||||||||||| || ||||| |
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| T |
28750689 |
agaaaaaccctaacaatccagcagaaacattcaacgaaggaataatcccagttgtgagattcaacttcatcacgataaacgtgaacatcaccgacaacat |
28750788 |
T |
|
| Q |
109 |
gatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaatctcatcaagttgttca |
208 |
Q |
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| T |
28750789 |
gagactcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaatctcctcgagttgttca |
28750888 |
T |
|
| Q |
209 |
tc |
210 |
Q |
| |
|
|| |
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|
| T |
28750889 |
tc |
28750890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 28741844 - 28742020
Alignment:
| Q |
9 |
agaagaaccctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacat |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||| |
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| T |
28741844 |
agaaaaaccctaacaacccagctgaaacattcaaagaaggaataatcccagttgtgagattcagtttcatcacaatgaacgtgaacattaccgacaacat |
28741943 |
T |
|
| Q |
109 |
gatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaa |
185 |
Q |
| |
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|| |||||| | || ||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
28741944 |
gagactcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 7963656 - 7963852
Alignment:
| Q |
17 |
cctaacaacccagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactga-taacatgatactc |
115 |
Q |
| |
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|||||||||||||| |||||||||| || ||||||||||||| ||||||||||| ||||||| ||||| |||||||||| || ||||||| |||| |
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| T |
7963656 |
cctaacaacccagcaaaaacattcaacgaatgaataatcccagttgtgagattcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactc |
7963755 |
T |
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| Q |
116 |
actactattgccctaaccgtaacctgtttctgccacgaaggaacaga-ttttccttcaaaccccttttcaacggaaatctcatcaagttgttcatcg |
211 |
Q |
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|| | ||| | ||||||| |||| | ||||||||| ||||| || ||||||||||||| | ||||| || ||||||| || | |||||||||| |
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| T |
7963756 |
acgaatataggcctaaccataacatttttctgccatataggaattgatttttccttcaaacactttttccacataaatctcctctaattgttcatcg |
7963852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 7961143 - 7961298
Alignment:
| Q |
27 |
cagccgaaacattcaaagagggaataatcccagtagtgagattcagcttcatcacaatgaaagtgaacatcactgataacatgatactcactactattgc |
126 |
Q |
| |
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|||| |||||||| || || |||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || | || | || |||||| | ||| || |
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| T |
7961143 |
cagcagaaacatttaatgaaggaataattccagttgtgagattgagcttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagc |
7961242 |
T |
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| Q |
127 |
cctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaacccctttt |
182 |
Q |
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| ||||||| || | || |||||| |||||| ||||||||||||||||| |||| |
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| T |
7961243 |
cataaccgtgacattttggtgccacataggaactgattttccttcaaacccttttt |
7961298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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