View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10855A_low_574 (Length: 204)

Name: NF10855A_low_574
Description: NF10855A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10855A_low_574
NF10855A_low_574
[»] chr1 (17 HSPs)
chr1 (69-194)||(22956746-22956871)
chr1 (69-193)||(21792902-21793026)
chr1 (69-187)||(21821220-21821338)
chr1 (78-193)||(22961057-22961172)
chr1 (83-193)||(37012164-37012274)
chr1 (78-193)||(18096712-18096827)
chr1 (90-193)||(49333525-49333628)
chr1 (82-193)||(4950697-4950808)
chr1 (90-193)||(25823230-25823333)
chr1 (83-193)||(26193226-26193327)
chr1 (98-193)||(25039191-25039287)
chr1 (98-193)||(25044403-25044499)
chr1 (120-193)||(27066298-27066372)
chr1 (83-193)||(20309041-20309152)
chr1 (120-194)||(20317819-20317894)
chr1 (120-193)||(20328302-20328376)
chr1 (121-193)||(20314641-20314714)
[»] chr5 (14 HSPs)
chr5 (72-193)||(21483780-21483901)
chr5 (69-193)||(20897108-20897232)
chr5 (69-193)||(20904508-20904632)
chr5 (90-194)||(205451-205555)
chr5 (120-193)||(37817807-37817881)
chr5 (83-186)||(20764526-20764630)
chr5 (120-193)||(34130462-34130536)
chr5 (120-193)||(37298787-37298861)
chr5 (120-193)||(19780794-19780867)
chr5 (120-193)||(13571653-13571727)
chr5 (120-193)||(22173225-22173299)
chr5 (120-193)||(27274154-27274228)
chr5 (121-193)||(4037952-4038025)
chr5 (120-193)||(31917021-31917095)
[»] chr2 (8 HSPs)
chr2 (70-187)||(21109444-21109561)
chr2 (83-193)||(3605701-3605811)
chr2 (115-187)||(69861-69933)
chr2 (83-194)||(22687448-22687559)
chr2 (83-193)||(12570757-12570868)
chr2 (83-188)||(37862800-37862906)
chr2 (120-193)||(45191046-45191120)
chr2 (119-149)||(44638744-44638774)
[»] scaffold0406 (1 HSPs)
scaffold0406 (72-193)||(15581-15702)
[»] chr8 (11 HSPs)
chr8 (70-187)||(31224485-31224602)
chr8 (69-188)||(2690042-2690161)
chr8 (82-188)||(5759570-5759677)
chr8 (90-193)||(11430446-11430549)
chr8 (83-193)||(20531098-20531209)
chr8 (92-193)||(31991429-31991531)
chr8 (83-188)||(23014788-23014894)
chr8 (120-193)||(14881464-14881538)
chr8 (120-193)||(14893814-14893888)
chr8 (120-193)||(31999019-31999093)
chr8 (153-193)||(20851721-20851761)
[»] chr7 (8 HSPs)
chr7 (82-193)||(9007107-9007218)
chr7 (90-193)||(12491510-12491613)
chr7 (90-176)||(12515318-12515404)
chr7 (83-193)||(10415872-10415983)
chr7 (120-193)||(24540599-24540673)
chr7 (120-193)||(45553411-45553485)
chr7 (120-188)||(19585984-19586053)
chr7 (72-138)||(12770300-12770366)
[»] scaffold0265 (1 HSPs)
scaffold0265 (69-187)||(11471-11589)
[»] scaffold0142 (1 HSPs)
scaffold0142 (72-160)||(28549-28637)
[»] chr4 (8 HSPs)
chr4 (83-193)||(44888913-44889023)
chr4 (90-193)||(16210947-16211050)
chr4 (90-187)||(16397102-16397199)
chr4 (120-193)||(16629742-16629816)
chr4 (96-193)||(7846527-7846624)
chr4 (83-158)||(2829719-2829794)
chr4 (142-193)||(14600451-14600502)
chr4 (91-142)||(6405648-6405700)
[»] scaffold0018 (3 HSPs)
scaffold0018 (69-193)||(58750-58874)
scaffold0018 (69-193)||(60178-60302)
scaffold0018 (69-193)||(54798-54922)
[»] scaffold0034 (1 HSPs)
scaffold0034 (78-188)||(7595-7705)
[»] scaffold0015 (2 HSPs)
scaffold0015 (69-126)||(198513-198570)
scaffold0015 (122-193)||(197170-197241)
[»] scaffold1468 (1 HSPs)
scaffold1468 (90-193)||(1506-1609)
[»] chr6 (12 HSPs)
chr6 (90-193)||(790997-791100)
chr6 (83-187)||(26168552-26168656)
chr6 (83-193)||(18706116-18706227)
chr6 (83-193)||(18712051-18712162)
chr6 (83-193)||(24505178-24505289)
chr6 (91-193)||(16321488-16321591)
chr6 (91-193)||(16333636-16333739)
chr6 (147-193)||(30657931-30657977)
chr6 (113-145)||(14045532-14045564)
chr6 (87-178)||(17824274-17824366)
chr6 (152-188)||(26168644-26168680)
chr6 (113-145)||(29540660-29540692)
[»] scaffold0014 (2 HSPs)
scaffold0014 (87-186)||(114326-114425)
scaffold0014 (83-194)||(146863-146975)
[»] scaffold0141 (1 HSPs)
scaffold0141 (83-188)||(18931-19037)
[»] chr3 (5 HSPs)
chr3 (90-188)||(51978540-51978638)
chr3 (90-193)||(12376731-12376834)
chr3 (120-193)||(19828012-19828086)
chr3 (83-193)||(20293205-20293316)
chr3 (120-193)||(20744843-20744917)
[»] scaffold0231 (1 HSPs)
scaffold0231 (119-193)||(16348-16421)
[»] scaffold0706 (1 HSPs)
scaffold0706 (83-193)||(1745-1856)
[»] scaffold0122 (1 HSPs)
scaffold0122 (120-193)||(23371-23445)
[»] scaffold0031 (1 HSPs)
scaffold0031 (120-193)||(111553-111627)
[»] scaffold0058 (1 HSPs)
scaffold0058 (121-193)||(29070-29143)
[»] scaffold0005 (1 HSPs)
scaffold0005 (142-193)||(216876-216927)
[»] scaffold1705 (1 HSPs)
scaffold1705 (120-193)||(1112-1186)
[»] scaffold0553 (1 HSPs)
scaffold0553 (120-193)||(628-702)
[»] scaffold0121 (1 HSPs)
scaffold0121 (69-138)||(6786-6855)
[»] scaffold0049 (1 HSPs)
scaffold0049 (82-178)||(4526-4622)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 22956746 - 22956871
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22956746 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 22956845  T
Q  169 acacaacaacgttctgatgtccatct 194  Q
    ||||||||||||||| |||| |||||    
T  22956846 acacaacaacgttctaatgttcatct 22956871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 21792902 - 21793026
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| ||||| ||||| | ||||| |||||||||||||||| | || ||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  21792902 atcatatggcacgcattgaagaaacccagaaactcatcatacattcatcaatgatgaacccagatgaagaacatcataaacatcaacattcttatgaaga 21793001  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||||||||| ||||    
T  21793002 acacaacaacattctgatgttcatc 21793026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 187
Target Start/End: Complemental strand, 21821338 - 21821220
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| ||||||||||| | ||||| |||||||||| ||| | | || ||||||||||||||||||||| ||| |||||||| |||||||| |||||||    
T  21821338 atcatatggcacacattgaacaaacccagaaactcataataaattcatcaatgatgaacccagatgaagaacatcataaacattaacattctgatgaaga 21821239  T
Q  169 acacaacaacgttctgatg 187  Q
    |||||||||| ||||||||    
T  21821238 acacaacaacattctgatg 21821220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 78 - 193
Target Start/End: Original strand, 22961057 - 22961172
Alignment:
Q  78 cacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaa 177  Q
    ||||||||||| ||| ||||||| |||||| ||| | || | ||||||||||||||||||| ||| || || ||||||||||| ||||||||||||||||    
T  22961057 cacacattggacaaatctagaaaatcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacaacaa 22961156  T
Q  178 cgttctgatgtccatc 193  Q
    | || |||||| ||||    
T  22961157 cattatgatgttcatc 22961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 37012164 - 37012274
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttc 182  Q
    |||||||||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || |||||||||| ||| |||||||||||  |||| |||    
T  37012164 attggataaacccagaaactcatcaaacattcatcattgatgaacccagatgaagaacatcatgaacatcaacaatctgatgaagaacacggcaacattc 37012263  T
Q  183 tgatgtccatc 193  Q
    |||||| ||||    
T  37012264 tgatgttcatc 37012274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 18096827 - 18096712
Alignment:
Q  78 cacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaa 177  Q
    ||||||||| | ||||| |||||||||||||||| | || | |||||||| || ||||||| ||| || || ||||||||| | ||||||||||||||||    
T  18096827 cacacattgaacaaaccgagaaactcatcatacattcatcattgatgaactcaaatgaagaacatcatgaatatcaacattttgatgaagaacacaacaa 18096728  T
Q  178 cgttctgatgtccatc 193  Q
    | ||||||||| ||||    
T  18096727 cattctgatgttcatc 18096712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 49333525 - 49333628
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||||||| | ||||||||||||||||| |||||||||     
T  49333525 aaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattttgatgaagaacacaacaacattctgatgtt 49333624  T
Q  190 catc 193  Q
    ||||    
T  49333625 catc 49333628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 4950697 - 4950808
Alignment:
Q  82 cattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgtt 181  Q
    ||||||| ||||| |||||||||||||||| | || | |||||||| ||||||||||  || || || ||||||||| | |||||||||||| |||| ||    
T  4950697 cattggacaaacccagaaactcatcatacattcatcattgatgaactcagatgaagaatatcatgaatatcaacattttgatgaagaacacatcaacatt 4950796  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  4950797 ctgatgttcatc 4950808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 25823333 - 25823230
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    |||||||||||||||||| ||| | || | ||||||||||| ||||||| ||| || || ||||||||||| |||||||| |||||||  |||||||||     
T  25823333 aaacctagaaactcatcagacattcatcattgatgaacccatatgaagaacatcatgaatatcaacattctgatgaagaaaacaacaagattctgatgtt 25823234  T
Q  190 catc 193  Q
    ||||    
T  25823233 catc 25823230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 26193327 - 26193226
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttc 182  Q
    |||||||  ||| |||||||||||||||| | || | |||||||||||||||||||         ||||||||||||| ||||||||||||||||| |||    
T  26193327 attggatggacccagaaactcatcatacattcatcattgatgaacccagatgaaga---------acatcaacattctgatgaagaacacaacaacattc 26193237  T
Q  183 tgatgtccatc 193  Q
    |||||| ||||    
T  26193236 tgatgttcatc 26193226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 25039287 - 25039191
Alignment:
Q  98 aaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  25039287 aaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 25039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 193
Target Start/End: Complemental strand, 25044499 - 25044403
Alignment:
Q  98 aaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  25044499 aaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 25044403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 27066298 - 27066372
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  27066298 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 27066372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 20309041 - 20309152
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaac-attctaatgaagaacacaacaacgtt 181  Q
    ||||||| ||||||| ||||||||| ||| | ||    |||||||||||||||||| ||| || || |||||  ||||| |||||||||||| |||| ||    
T  20309041 attggatgaacctaggaactcatcagacattcatcctggatgaacccagatgaagaacataatgaatatcaaagattctgatgaagaacacagcaacatt 20309140  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  20309141 ctgatgttcatc 20309152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 20317894 - 20317819
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatct 194  Q
    ||||||||| ||||||| | ||| || || ||||| |||||| ||||||||||||||||| ||||||||| |||||    
T  20317894 tgatgaacctagatgaataacatcatgaatatcaaacattctgatgaagaacacaacaacattctgatgttcatct 20317819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 20328376 - 20328302
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||| | ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  20328376 tgatgaacccagatgaataacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 20328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 20314641 - 20314714
Alignment:
Q  121 gatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||| ||||||||| ||| || || ||||| |||||| ||||||||||||||||| |||| |||| ||||    
T  20314641 gatgaacctagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacattctaatgttcatc 20314714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 193
Target Start/End: Complemental strand, 21483901 - 21483780
Alignment:
Q  72 ataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaaca 171  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||| ||||||| ||||||||||||| || |||||||||||| | ||||||||||    
T  21483901 ataaggcacacattggataaacccagaaactcatcatacattcataaataatgaacctagatgaagatcataatgaacatcaacattttgatgaagaaca 21483802  T
Q  172 caacaacgttctgatgtccatc 193  Q
    ||||||| ||||||||| ||||    
T  21483801 caacaacattctgatgttcatc 21483780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 20897108 - 20897232
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| ||||| ||||| | ||| | |||||||||||||||| | || || |||||||||||||||| | ||| |||||||||| |||||| |||||||    
T  20897108 atcatatggcacgcattgaacaaatccagaaactcatcatacattcatcaaagatgaacccagatgaataacatcataaacatcatcattcttatgaaga 20897207  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    |||||||||| |||| |||| ||||    
T  20897208 acacaacaacattctaatgttcatc 20897232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 20904632 - 20904508
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| ||||||||||| | ||||| ||||| |||||||||| | || ||||||||||| ||||||| | ||| | ||| || ||| |||| |||||||    
T  20904632 atcatatggcacacattgaacaaacccagaaattcatcatacattcatcaatgatgaacctagatgaaaaacatcaaaaaaattaacgttctgatgaaga 20904533  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||||||||| ||||    
T  20904532 acacaacaacattctgatgttcatc 20904508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 205555 - 205451
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    |||||||||||||||| | ||| | || | ||||||||||| ||||||| ||| || || ||||||||||| ||||||||||||||||| ||||| |||     
T  205555 aaacctagaaactcataagacattcatcattgatgaacccaaatgaagaacatcatgaatatcaacattctgatgaagaacacaacaacattctggtgtt 205456  T
Q  190 catct 194  Q
    |||||    
T  205455 catct 205451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 37817807 - 37817881
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||||||||||||||||||||| ||||||||| ||||    
T  37817807 tgatgaacccagatgaagaacatcatgaatatcaaacattctaatgaagaacacaacaacattctgatgttcatc 37817881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 20764526 - 20764630
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    ||||||||||||||||||||||||| ||| | || | ||||||||||||||||||| ||| || || | | ||||||| |||| |||||||| |||| ||    
T  20764526 attggataaacctagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaataccaaacattccaatgcagaacacagcaacatt 20764625  T
Q  182 ctgat 186  Q
    |||||    
T  20764626 ctgat 20764630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 34130536 - 34130462
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||||| ||||||||| ||||    
T  34130536 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacattctgatgttcatc 34130462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 37298861 - 37298787
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||||| ||||||||| ||||    
T  37298861 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacattctgatgttcatc 37298787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 19780794 - 19780867
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||| ||||||||| ||| || || ||||||||||| |||||||||||| |||| ||||||||| ||||    
T  19780794 tgatgaacctagatgaagaacatcatgaatatcaacattctgatgaagaacacagcaacattctgatgttcatc 19780867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 13571727 - 13571653
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  13571727 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 13571653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 22173299 - 22173225
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  22173299 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 22173225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 27274228 - 27274154
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  27274228 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 27274154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 4038025 - 4037952
Alignment:
Q  121 gatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  4038025 gatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 4037952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 31917021 - 31917095
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||| |||| ||| || || ||||| |||||| ||||||||||||||||| ||||||||| ||||    
T  31917021 tgatgaaccccgataaagaacatcatgaatatcaaacattctgatgaagaacacaacaacattctgatgttcatc 31917095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 21109444 - 21109561
Alignment:
Q  70 tcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaa 169  Q
    |||| ||||||||||||||||||||  ||||||||||||||||| || |||||| ||||||||||||||||||||| |||||||||||||| |  |||||    
T  21109444 tcatcaggcacacattggataaaccctgaaactcatcatacactcatcaatgataaacccagatgaagatcatgatgaacatcaacattctgacaaagaa 21109543  T
Q  170 cacaacaacgttctgatg 187  Q
    ||||||||||||||||||    
T  21109544 cacaacaacgttctgatg 21109561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 3605811 - 3605701
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttc 182  Q
    ||||||||||||||||||||||||| ||| | || | ||||||||| ||||||||| ||| || || ||||||||||| ||||||||||||||||| |||    
T  3605811 attggataaacctagaaactcatcagacattcatcattgatgaacctagatgaagaacatcatgaatatcaacattctgatgaagaacacaacaacattc 3605712  T
Q  183 tgatgtccatc 193  Q
    |||||| ||||    
T  3605711 tgatgttcatc 3605701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 69933 - 69861
Alignment:
Q  115 ataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatg 187  Q
    |||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||| |||||| ||||||||    
T  69933 ataaatgatgaacccaaatgaagaccatgatgaacatcaacattctgatgaagaacataacaacattctgatg 69861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 22687559 - 22687448
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    ||||||| |||| |||||||||||| ||| | || ||||||||||||||||||||| ||| || || ||| |||||||| ||||||||||| ||||| ||    
T  22687559 attggatgaacccagaaactcatcaaacattcatcaatgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacac-acaacatt 22687461  T
Q  182 ctgatgtccatct 194  Q
    ||||||| |||||    
T  22687460 ctgatgttcatct 22687448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 12570757 - 12570868
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||||| |||||||||||||||| ||| | || | ||||||||||||||||||| ||| || || | | |||||||| |||||||||||| |||| ||    
T  12570757 attggatagacctagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaataccaaacattctgatgaagaacacagcaacatt 12570856  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  12570857 ctgatgttcatc 12570868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 37862906 - 37862800
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgtt 181  Q
    |||||||  ||| |||||||||||| ||| | ||   ||||||||| ||||||||| ||| |  || ||||| |||||||||||||||||||||||| ||    
T  37862906 attggatggacccagaaactcatcagacattcatccttgatgaacctagatgaagaacatcaggaatatcaaacattctaatgaagaacacaacaacatt 37862807  T
Q  182 ctgatgt 188  Q
    |||||||    
T  37862806 ctgatgt 37862800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 45191046 - 45191120
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  45191046 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 45191120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 149
Target Start/End: Complemental strand, 44638774 - 44638744
Alignment:
Q  119 atgatgaacccagatgaagatcatgataaac 149  Q
    |||||||||||||||||||||||||||||||    
T  44638774 atgatgaacccagatgaagatcatgataaac 44638744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 15581 - 15702
Alignment:
Q  72 ataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaaca 171  Q
    ||||||||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||||||| |||||| || || |||||||| ||||||||||    
T  15581 ataaggcacacattgaacaaacccagaaattcatcatacactcataaatgatgaacccagatgaagaacatgatgaaaatgaacattctgatgaagaaca 15680  T
Q  172 caacaacgttctgatgtccatc 193  Q
    ||||||| ||||||||| ||||    
T  15681 caacaacattctgatgttcatc 15702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 31224602 - 31224485
Alignment:
Q  70 tcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaa 169  Q
    |||||| |||||||||||||||||| ||||||||||||| || | |||||||||||||||| |||||  ||||||| |||||||||||||| ||||||||    
T  31224602 tcataaagcacacattggataaacccagaaactcatcattcattcataaatgatgaacccatatgaatgtcatgatgaacatcaacattctgatgaagaa 31224503  T
Q  170 cacaacaacgttctgatg 187  Q
    ||||||||| ||||||||    
T  31224502 cacaacaacattctgatg 31224485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 69 - 188
Target Start/End: Complemental strand, 2690161 - 2690042
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||  |||   ||||||| |||||||||||||| |||||||    
T  2690161 atcatgaggcacgcattggataaacccagaaactcatcatacactcataaatgatgaacccaactgattgtcatgatgaacatcaacattctgatgaaga 2690062  T
Q  169 acacaacaacgttctgatgt 188  Q
    ||| |||||| |||||||||    
T  2690061 acataacaacattctgatgt 2690042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 5759570 - 5759677
Alignment:
Q  82 cattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgt 180  Q
    ||||||| ||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||| |||||||| ||||||||||||||||| |    
T  5759570 cattggacaaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacat 5759669  T
Q  181 tctgatgt 188  Q
    ||||||||    
T  5759670 tctgatgt 5759677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 11430549 - 11430446
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| ||  | ||||||||||| ||||||||||||||||| |||||||||     
T  11430549 aaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatggatatcaacattctgatgaagaacacaacaacattctgatgtt 11430450  T
Q  190 catc 193  Q
    ||||    
T  11430449 catc 11430446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 20531209 - 20531098
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgtt 181  Q
    ||||||| |||  |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||||| ||    
T  20531209 attggatgaactcagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacatt 20531110  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  20531109 ctgatgttcatc 20531098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 193
Target Start/End: Complemental strand, 31991531 - 31991429
Alignment:
Q  92 acctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtcc 190  Q
    |||||||||||||||| ||| | ||   ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| |    
T  31991531 acctagaaactcatcagacattcatccttgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttc 31991432  T
Q  191 atc 193  Q
    |||    
T  31991431 atc 31991429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 83 - 188
Target Start/End: Complemental strand, 23014894 - 23014788
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgtt 181  Q
    |||||||||| | |||||||||||| | | | || | ||||||||||||||||||| ||| || || | ||| |||||| ||||||||||||||||| ||    
T  23014894 attggataaatccagaaactcatcagatattcatcattgatgaacccagatgaagaacatcatgaataccaaacattctgatgaagaacacaacaacatt 23014795  T
Q  182 ctgatgt 188  Q
     ||||||    
T  23014794 atgatgt 23014788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 14881538 - 14881464
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||| |||||||||||||| ||| || || ||||| ||||||||| ||||||||| |||| ||||||||| ||||    
T  14881538 tgataaacccagatgaagaacatcatgaatatcaaacattctaataaagaacacagcaacattctgatgttcatc 14881464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 14893888 - 14893814
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||| |||||||||||||| ||| || || ||||| ||||||||| ||||||||| |||| ||||||||| ||||    
T  14893888 tgataaacccagatgaagaacatcatgaatatcaaacattctaataaagaacacagcaacattctgatgttcatc 14893814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 31999093 - 31999019
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||  ||||||||| ||||    
T  31999093 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaaaattctgatgttcatc 31999019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 20851721 - 20851761
Alignment:
Q  153 aacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  20851721 aacattctgatgaagaacacaacaacattctgatgttcatc 20851761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 6e-33; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 9007107 - 9007218
Alignment:
Q  82 cattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgtt 181  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| ||    
T  9007107 cattggataaacccagaaactcatcatacattcatatatgatgaacccaaatgaagatcttgatgaacatcaacattctgatgaagaacacaacaacatt 9007206  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  9007207 ctgatgttcatc 9007218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 12491510 - 12491613
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    |||||||||||||||||||||| | || | ||||||||||||||||||| ||| || || ||||||||||| |||||||||||| |||| |||||||||     
T  12491510 aaacctagaaactcatcatacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacagcaacattctgatgtt 12491609  T
Q  190 catc 193  Q
    ||||    
T  12491610 catc 12491613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 176
Target Start/End: Original strand, 12515318 - 12515404
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaaca 176  Q
    |||||||||||||||||||||| | || | ||||||||||||||||||| ||| || || ||||||||||| |||||||||||||||    
T  12515318 aaacctagaaactcatcatacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacaaca 12515404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 10415872 - 10415983
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||||||||| |||||||||||| ||| | || | ||||||||| ||||||||| ||| || || | | |||||||| |||||||||| | |||| ||    
T  10415872 attggataaacccagaaactcatcagacattcatcattgatgaacctagatgaagaacatcatgaataccaaacattctgatgaagaacatagcaacatt 10415971  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  10415972 ctgatgttcatc 10415983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 24540673 - 24540599
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  24540673 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 24540599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 45553411 - 45553485
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| |||  | || ||||| |||||| ||||||||||||||||| ||||||||| ||||    
T  45553411 tgatgaacccagatgaagaacatcgtgaatatcaaacattctgatgaagaacacaacaacattctgatgttcatc 45553485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 19585984 - 19586053
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgt 188  Q
    ||||||||||| ||||||| ||| || || ||||| |||||| ||||||||||||||||| |||||||||    
T  19585984 tgatgaacccaaatgaagaacatcatgaatatcaatcattctgatgaagaacacaacaacattctgatgt 19586053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 12770300 - 12770366
Alignment:
Q  72 ataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaaga 138  Q
    ||||||||| ||||| | ||||| | ||| ||||||||||||  ||||||||||||| |||||||||    
T  12770300 ataaggcacgcattgaaaaaacccataaattcatcatacactcgtaaatgatgaacctagatgaaga 12770366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 11471 - 11589
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| ||||||||||| | ||||| |||||||||| ||| | | || ||||||||||||||||||||| ||| |||||||| |||||||| |||||||    
T  11471 atcatatggcacacattgaacaaacccagaaactcataataaattcatcaatgatgaacccagatgaagaacatcataaacattaacattctgatgaaga 11570  T
Q  169 acacaacaacgttctgatg 187  Q
    |||||||||| ||||||||    
T  11571 acacaacaacattctgatg 11589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 28637 - 28549
Alignment:
Q  72 ataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattct 160  Q
    ||||||||| ||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||| || ||||||||||||||    
T  28637 ataaggcacgcattggataaacccagaaactcatcttacattcataaatgatgaacccagatgaagatcataatgaacatcaacattct 28549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 44888913 - 44889023
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttc 182  Q
    |||||||||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||||||||| |||||||||||| |||| |||    
T  44888913 attggataaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacagcaacattc 44889012  T
Q  183 tgatgtccatc 193  Q
    |||||| ||||    
T  44889013 tgatgttcatc 44889023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 16211050 - 16210947
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||||||||| |||||||||||| |||| |||||||||     
T  16211050 aaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacatcaacattctgatgtt 16210951  T
Q  190 catc 193  Q
    ||||    
T  16210950 catc 16210947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 16397102 - 16397199
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatg 187  Q
    ||||| |||||||||||| ||  | || | ||||||||||||||||||| ||| ||| | ||||||||||| ||||||||||||||||| ||||||||    
T  16397102 aaacccagaaactcatcagactttcatcattgatgaacccagatgaagaacatcatagatatcaacattctgatgaagaacacaacaacattctgatg 16397199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 16629742 - 16629816
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  16629742 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 16629816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 7846624 - 7846527
Alignment:
Q  96 agaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||||  ||| | || | ||| ||||||||||||||| ||| || || || |||||||| ||||||||||||||||| | ||||||| ||||    
T  7846624 agaaactcatctgacattcatcattgaagaacccagatgaagaacatcatgaatattaacattctgatgaagaacacaacaacatgctgatgttcatc 7846527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Original strand, 2829719 - 2829794
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacatt 158  Q
    |||||||||||| | |||||||||| ||| | || | ||||||||| ||||||||| ||| || ||||||||||||    
T  2829719 attggataaaccgataaactcatcaaacattcatcattgatgaacctagatgaagaacatcatgaacatcaacatt 2829794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 14600502 - 14600451
Alignment:
Q  142 tgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||| |||||||||||||| ||||||||||||||||| |||| |||| ||||    
T  14600502 tgatgaacatcaacattctgatgaagaacacaacaacattctaatgttcatc 14600451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 6405700 - 6405648
Alignment:
Q  91 aacctagaaactcat-catacacttataaatgatgaacccagatgaagatcat 142  Q
    ||||||||||||||| |||||| | ||| |||||||||||| |||||||||||    
T  6405700 aacctagaaactcatacatacattcatacatgatgaacccaaatgaagatcat 6405648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 58750 - 58874
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| || |||||||| | ||||||||||||||||||| || | || ||||||||||| ||||||||| ||| || |||||||||||| | |||||||    
T  58750 atcatatggaacacattgaacaaacctagaaactcatcattcattcatcaatgatgaacctagatgaagaacatcatgaacatcaacattttgatgaaga 58849  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    ||| | |||| ||||||||| ||||    
T  58850 acatagcaacattctgatgttcatc 58874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 60178 - 60302
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| || |||||||| | ||||||||||||||||||| || | || ||||||||||| ||||||||| ||| || |||||||||||| | |||||||    
T  60178 atcatatggaacacattgaacaaacctagaaactcatcattcattcatcaatgatgaacctagatgaagaacatcatgaacatcaacattttgatgaaga 60277  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    ||| | |||| ||||||||| ||||    
T  60278 acatagcaacattctgatgttcatc 60302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 69 - 193
Target Start/End: Original strand, 54798 - 54922
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaaga 168  Q
    |||||| || |||||||| | ||||| ||||||||||||| || | || ||||||||||| ||||||||| ||| || |||||||||||| | |||||||    
T  54798 atcatatggaacacattgaacaaaccaagaaactcatcattcattcatcaatgatgaacctagatgaagaacatcatgaacatcaacattttgatgaaga 54897  T
Q  169 acacaacaacgttctgatgtccatc 193  Q
    ||| | |||| ||||||||| ||||    
T  54898 acatagcaacattctgatgttcatc 54922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 78 - 188
Target Start/End: Original strand, 7595 - 7705
Alignment:
Q  78 cacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaa 177  Q
    ||||||||| | ||||| |||||||||||||||| | ||   ||||||||||||||||||| ||| || || ||||||||| | ||||||||||||||||    
T  7595 cacacattgaacaaacccagaaactcatcatacattcatctttgatgaacccagatgaagaacatcatgaatatcaacattttgatgaagaacacaacaa 7694  T
Q  178 cgttctgatgt 188  Q
    | |||||||||    
T  7695 cattctgatgt 7705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 198570 - 198513
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaa 126  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  198570 atcataacgcacacattggataaacctagaaactcatcatacactcataaatgatgaa 198513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 197241 - 197170
Alignment:
Q  122 atgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||| ||||    
T  197241 atgaacccaggtgaagatcatgatgaacatcaatattctaatgaagaacacaacaacattctaatgttcatc 197170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1468 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold1468
Description:

Target: scaffold1468; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 1506 - 1609
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || ||||||||| | ||||||||||||||||| |||||||||     
T  1506 aaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattttgatgaagaacacaacaacattctgatgtt 1605  T
Q  190 catc 193  Q
    ||||    
T  1606 catc 1609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 791100 - 790997
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | |||||||| |||||||||| ||| || || ||||||||||| ||||||||||||||||| |||||||||     
T  791100 aaacccagaaactcatcagacattcatcattgatgaactcagatgaagaacatcatgaatatcaacattctgatgaagaacacaacaacattctgatgtt 791001  T
Q  190 catc 193  Q
    ||||    
T  791000 catc 790997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 26168552 - 26168656
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttc 182  Q
    |||||||||| | |||||||||||| ||| | ||   ||||||||||||||||||| ||| || || ||||||||||| |||||||||||| |||| |||    
T  26168552 attggataaagccagaaactcatcagacattcatccttgatgaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacagcaacattc 26168651  T
Q  183 tgatg 187  Q
    |||||    
T  26168652 tgatg 26168656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 18706227 - 18706116
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||||||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || | | |||||| | |||||||||||| |||| ||    
T  18706227 attggataaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaataccaaacattttgatgaagaacacagcaacatt 18706128  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  18706127 ctgatgttcatc 18706116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 18712162 - 18712051
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||||||||| |||||||||||| ||| | || | ||||||||||||||||||| ||| || || | | |||||| | |||||||||||| |||| ||    
T  18712162 attggataaacccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaataccaaacattttgatgaagaacacagcaacatt 18712063  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  18712062 ctgatgttcatc 18712051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 24505289 - 24505178
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgtt 181  Q
    |||||||  ||| |||||||||| | ||| ||||   ||||||||||||||||||| ||| || || ||||| |||||| ||||||||||||||||| ||    
T  24505289 attggatggacccagaaactcattagacatttatccttgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacatt 24505190  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  24505189 ctgatgttcatc 24505178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 16321488 - 16321591
Alignment:
Q  91 aacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtc 189  Q
    |||| |||||||||||| ||| | || | ||||||||||| ||||||| ||| || || ||||| |||||| |||||||||||| | || |||||||||     
T  16321488 aacccagaaactcatcagacattcatcattgatgaacccaaatgaagaacatcatgaatatcaaacattctgatgaagaacacagctacattctgatgtt 16321587  T
Q  190 catc 193  Q
    ||||    
T  16321588 catc 16321591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 193
Target Start/End: Original strand, 16333636 - 16333739
Alignment:
Q  91 aacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtc 189  Q
    |||| |||||||||||| ||| | || | ||||||||||| ||||||| ||| || || ||||| |||||| |||||||||||| | || |||||||||     
T  16333636 aacccagaaactcatcagacattcatcattgatgaacccaaatgaagaacatcatgaatatcaaacattctgatgaagaacacagctacattctgatgtt 16333735  T
Q  190 catc 193  Q
    ||||    
T  16333736 catc 16333739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 30657977 - 30657931
Alignment:
Q  147 aacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||||||| |||||||||||| |||| ||||||||| ||||    
T  30657977 aacatcaacattctgatgaagaacacagcaacattctgatgttcatc 30657931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 14045532 - 14045564
Alignment:
Q  113 ttataaatgatgaacccagatgaagatcatgat 145  Q
    ||||| |||||||||||||||||||||||||||    
T  14045532 ttatatatgatgaacccagatgaagatcatgat 14045564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 17824274 - 17824366
Alignment:
Q  87 gataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaac 178  Q
    |||||| | |||||||||||| ||| | || | ||||||||||||||||||| ||| || || | | |||||||| |||||||||||| ||||    
T  17824274 gataaatccagaaactcatcagacattcatcattgatgaacccagatgaagaacatcatgaataccaaacattctgatgaagaacacagcaac 17824366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 26168644 - 26168680
Alignment:
Q  152 caacattctaatgaagaacacaacaacgttctgatgt 188  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  26168644 caacattctgatgaagaacacaacaacattctgatgt 26168680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 29540660 - 29540692
Alignment:
Q  113 ttataaatgatgaacccagatgaagatcatgat 145  Q
    ||||| |||||||||||||||||||||||||||    
T  29540660 ttatacatgatgaacccagatgaagatcatgat 29540692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 114425 - 114326
Alignment:
Q  87 gataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgat 186  Q
    |||||||| |||||||||||| ||| | ||   |||| |||||||||||||| ||| || || ||||||||||| ||||||||||||||||| |||||||    
T  114425 gataaacccagaaactcatcagacattcatccttgataaacccagatgaagaacatcatgaatatcaacattctgatgaagaacacaacaacattctgat 114326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 194
Target Start/End: Original strand, 146863 - 146975
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    ||||||| |||| |||||||||||| ||| | || | |||||||||||||||||||  || || || ||| |||||||| |||||||||||| |||| ||    
T  146863 attggatgaacccagaaactcatcagacattcatcattgatgaacccagatgaagaatatcatgaatatcaaacattctgatgaagaacacagcaacatt 146962  T
Q  182 ctgatgtccatct 194  Q
    ||||||| |||||    
T  146963 ctgatgttcatct 146975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 18931 - 19037
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgtt 181  Q
    ||||||| |||| |||||||||||| ||| | || | ||||||||| ||||||||| ||| || || ||||| |||||| ||||||||||||||||| ||    
T  18931 attggatgaacccagaaactcatcagacattcatcattgatgaacctagatgaagaacatcatgaatatcaaacattctgatgaagaacacaacaacatt 19030  T
Q  182 ctgatgt 188  Q
    |||||||    
T  19031 ctgatgt 19037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 51978638 - 51978540
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgt 188  Q
    ||||| ||||||| |||| ||| | || | ||||||||||||||||||| ||| || || ||||||||| | ||||||||||||||||| |||||||||    
T  51978638 aaacccagaaacttatcagacattcatcattgatgaacccagatgaagaacatcatgaatatcaacattttgatgaagaacacaacaacattctgatgt 51978540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Original strand, 12376731 - 12376834
Alignment:
Q  90 aaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtc 189  Q
    ||||| |||||||||||| ||| | || | |||| |||||| ||||||| ||| || || |||| |||||| |||||||||||| |||| |||||||||     
T  12376731 aaacccagaaactcatcagacattcatcattgattaacccaaatgaagaacatcatgaatatcagcattctgatgaagaacacagcaacattctgatgtt 12376830  T
Q  190 catc 193  Q
    ||||    
T  12376831 catc 12376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 19828086 - 19828012
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  19828086 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacatcaacattctgatgttcatc 19828012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 20293205 - 20293316
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||| ||||| |||||||||||| ||| | || | ||||||||| ||||||||| | | || || | | |||||||| |||||||||||| |||| ||    
T  20293205 attggacaaacccagaaactcatcagacattcatcattgatgaacctagatgaagaacttcatgaataccaaacattctgatgaagaacacatcaacatt 20293304  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  20293305 ctgatgttcatc 20293316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 20744917 - 20744843
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||  ||||||||| ||||    
T  20744917 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaaaattctgatgttcatc 20744843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 16421 - 16348
Alignment:
Q  119 atgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||| |||||||  || |||| |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  16421 atgatgaacctagatgaatgtc-tgatgaacatcaacattctgatgaagaacacaacaacattctgatgttcatc 16348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0706 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 1856 - 1745
Alignment:
Q  83 attggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgtt 181  Q
    |||||||  ||| |||||||||||| ||| | ||   ||||||||||||||||||| ||| ||||| ||| |||||||| || ||||||||| |||| ||    
T  1856 attggatggacccagaaactcatcagacattcatccttgatgaacccagatgaagaacatcataaatatcaaacattctgataaagaacacagcaacatt 1757  T
Q  182 ctgatgtccatc 193  Q
    ||||||| ||||    
T  1756 ctgatgttcatc 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 23371 - 23445
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  23371 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 23445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 111627 - 111553
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  111627 tgatgaacccagatgaagaacatcatgaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 111553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 29143 - 29070
Alignment:
Q  121 gatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||||||||||||||||| ||| || || ||||| |||| | ||||||||||||||||| ||||||||| ||||    
T  29143 gatgaacccagatgaagaacatcatgaatatcaaacattttgatgaagaacacaacaacattctgatgttcatc 29070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 216876 - 216927
Alignment:
Q  142 tgataaacatcaacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    |||| |||||||||||||| ||||||||||||||||| |||| |||| ||||    
T  216876 tgatgaacatcaacattctgatgaagaacacaacaacattctaatgttcatc 216927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1705 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1705
Description:

Target: scaffold1705; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 1112 - 1186
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatcaa-cattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| |  || ||||| |||||| |||||||||||| |||| ||||||||| ||||    
T  1112 tgatgaacccagatgaagaacatcaagaatatcaaacattctgatgaagaacacagcaacattctgatgttcatc 1186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 702 - 628
Alignment:
Q  120 tgatgaacccagatgaagatcatgataaacatc-aacattctaatgaagaacacaacaacgttctgatgtccatc 193  Q
    ||||||||||||||||||| ||| || || ||| |||||||| |||||||||| | |||| ||||||||| ||||    
T  702 tgatgaacccagatgaagaacatcatgaaaatcaaacattcttatgaagaacagagcaacattctgatgttcatc 628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 6855 - 6786
Alignment:
Q  69 atcataaggcacacattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaaga 138  Q
    |||||| ||||||||||| | ||||| | |||||||||| ||| | || ||||||||||||| |||||||    
T  6855 atcatatggcacacattgaacaaacccataaactcatcacacattcatcaatgatgaacccaaatgaaga 6786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 4526 - 4622
Alignment:
Q  82 cattggataaacctagaaactcatcatacacttataaatgatgaacccagatgaagatcatgataaacatcaacattctaatgaagaacacaacaac 178  Q
    ||||||| ||||| | |||||||||| ||| | || | ||||||| ||| ||||||| |||  | || ||| ||||||| |||||||||||||||||    
T  4526 cattggacaaacccaaaaactcatcagacattcatcattgatgaatccaaatgaagaacatcttgaatatcgacattctgatgaagaacacaacaac 4622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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